Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01462 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGTTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGTGCGAATCAAACATAA 855 0.3942 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDVGIIHCDLKPENILLCASANQT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01462 284 SMART serkin_6 142 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01462 284 PANTHER DUAL SPECIFICITY PROTEIN KINASE 17 280 - -
Vifa2g01462 284 Gene3D Transferase(Phosphotransferase) domain 1 222 284 - -
Vifa2g01462 284 SUPERFAMILY Protein kinase-like (PK-like) 136 278 IPR011009 -
Vifa2g01462 284 MobiDBLite consensus disorder prediction 1 36 - -
Vifa2g01462 284 Pfam Protein kinase domain 142 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01462 284 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Vifa2g01462 284 Gene3D Phosphorylase Kinase; domain 1 106 221 - -
Vifa2g01462 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa2g01462 284 MobiDBLite consensus disorder prediction 7 36 - -
Vifa2g01462 284 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa2g01462 284 ProSiteProfiles Protein kinase domain profile. 142 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01462 Vifa-Chr2 395142407 395145670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01462 138 280 EF-hand Containing Proteins AT5G22840 37.838 8.58e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa2g01462 Pkinase 2.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01462 K18670 - gmx:100786931 431.409