Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01454 ATGGCACTTTTTCCTACTGGAAAGCTTATGTTTTTCCTCGCCTTGACCTCACTGGGCGAGCTTGCTCAATTTCCTCTTCTTTGCTTTGCGTCTTCTTGTTTGGTTTGTGTCTTATTCTTTGATTTGAGAAATCAAATTAGCAATGGAAACAAACACTTTGCAACAGCACAAGAAGCAAGAGGAGAGGTGATAGTATATTCTCTTTTTCAATGCAGAAATTACCTCTCCATAAAGGATTGTCTTGCTTGCTTCGACACCGCTTCTGCTAAAATTCGTAACTGCTCAGCTTCCAATGGTGCTAGACTCATCTACGATGGCTGTTTCTTAAGGTACGAGAGTGAAAGATTCTATGATCAAACAAATCAACCTGGGGGTGGTATATTATGTGGGAACAAGACTGCAAAGGAAGGTGCCTCTTTTCGAACAATTGGACAAAAAGTGCTAATGGATCTCCAATTAGCAACACCAAAAATTAAAGGCTTTTTTGCAGCTACTAAGACAAAGGTGAATCCTGGTAGCAATAGTTCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACAGAAAGTACTTGTCTTGATTGCATGACAGTTGGATACAACAACTTGCAAACTTGTCTTCCTAATACAGATGGTAGAGCATATGATGCAGGGTGTTTTATGAGATACTCAGAAACACCATTTTTTGCTGATAATCAAGTCGTTGATATCACAACCTATTTAAGTCAAGGTGGTTCAAGCAACAAATGGGCCATTATAGGTGGTGTTATTAGCGGTGTAGGTCTTGTTGCAATTATTCTTGCAATTTTAGCTTGGCGACAATACAGAAAACCCAAGAGAGCTCCTAGAGGAAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAGTGATTTGAAAGCTGCAACAAAAAACTTCAGTGAAGAAAATAAACTGGGAGAAGGAGGATTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAATGTTGTAGCAGTCAAGAAACTAGTTTTGGGAAAATCCAGCAAGATAGACAATGATTTTGAAAGTGAAGTAAAGCTTATAAGCAATGTTCATCATAGGAATCTTGTTAGACTTCTTGGTTGTTGCAGTAAAAAACAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGCAGCCTAGACAAATTCTTATTTGGTGGAAAACAAGGTTCCCTCAATTGGAAACAAAGGTGTGATATAATTTTAGGCACAGCAAGGGGACTGGCCTATCTTCATGAAGAATTCCACATTTCCATTATACATAGAGATATAAAGAGTAGCAATATCCTCCTTGATGATAATCTTCATCCTAAAATTGCTGATTTTGGATTGGCACGACTTTTGCCGGGGGATCGATCTCATCTAAGCACAGGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCTATTCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCTTAGAAATCATAAGTGGTCAAAAGAGTACAGAAGTAAAGGAAGATGATGACGGTGAATACCTTCTTCAAAAATCATGGAAACTGCATGAGAGAGGCATGCACTTGGAGCTAATGGATAATACCTTAGACCCTAATGACTATGATCCAAAAGAAGTGAAGAAAATGATAGAGATTGCTTTACTATGCACTCAAGCATCAGCAGGAATGAGACCAACAATGTCGGAAGTAGTAGTCCTCCTCCAAACCAGTAGTTTAATGGAGCACATACAACCAACTATGCCTGTGTTTGTAGATACGAATCTTAGGTCTCGTGAAGGACACTCTACCTCAACTGGTTCTTCTACATCTAATGCTACTGCCTCATTTTCTATTTTATCAGCTCGGTGA 1890 0.3899 MALFPTGKLMFFLALTSLGELAQFPLLCFASSCLVCVLFFDLRNQISNGNKHFATAQEARGEVIVYSLFQCRNYLSIKDCLACFDTASAKIRNCSASNGARLIYDGCFLRYESERFYDQTNQPGGGILCGNKTAKEGASFRTIGQKVLMDLQLATPKIKGFFAATKTKVNPGSNSSIYAIAQCVETATESTCLDCMTVGYNNLQTCLPNTDGRAYDAGCFMRYSETPFFADNQVVDITTYLSQGGSSNKWAIIGGVISGVGLVAIILAILAWRQYRKPKRAPRGNILGATELKGPVNYKYSDLKAATKNFSEENKLGEGGFGDVYKGTLKNGNVVAVKKLVLGKSSKIDNDFESEVKLISNVHHRNLVRLLGCCSKKQERILVYEYMANSSLDKFLFGGKQGSLNWKQRCDIILGTARGLAYLHEEFHISIIHRDIKSSNILLDDNLHPKIADFGLARLLPGDRSHLSTGVAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEVKEDDDGEYLLQKSWKLHERGMHLELMDNTLDPNDYDPKEVKKMIEIALLCTQASAGMRPTMSEVVVLLQTSSLMEHIQPTMPVFVDTNLRSREGHSTSTGSSTSNATASFSILSAR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01454 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vifa2g01454 629 CDD STKc_IRAK 316 582 - -
Vifa2g01454 629 Gene3D Transferase(Phosphotransferase) domain 1 387 594 - -
Vifa2g01454 629 SUPERFAMILY Protein kinase-like (PK-like) 295 595 IPR011009 -
Vifa2g01454 629 Gene3D - 126 228 IPR038408 -
Vifa2g01454 629 Gene3D - 34 116 IPR038408 -
Vifa2g01454 629 SMART serkin_6 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01454 629 ProSiteProfiles Protein kinase domain profile. 310 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01454 629 ProSiteProfiles Gnk2-homologous domain profile. 12 116 IPR002902 -
Vifa2g01454 629 Pfam Salt stress response/antifungal 132 225 IPR002902 -
Vifa2g01454 629 Pfam Salt stress response/antifungal 48 113 IPR002902 -
Vifa2g01454 629 ProSiteProfiles Gnk2-homologous domain profile. 122 228 IPR002902 -
Vifa2g01454 629 Gene3D Phosphorylase Kinase; domain 1 279 386 - -
Vifa2g01454 629 FunFam Cysteine-rich receptor-like protein kinase 2 275 386 - -
Vifa2g01454 629 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 67 616 - -
Vifa2g01454 629 FunFam Cysteine-rich receptor-like protein kinase 2 124 228 - -
Vifa2g01454 629 FunFam Cysteine-rich receptor-like protein kinase 2 387 589 - -
Vifa2g01454 629 Pfam Protein kinase domain 311 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01454 629 ProSitePatterns Protein kinases ATP-binding region signature. 316 339 IPR017441 GO:0005524
Vifa2g01454 629 MobiDBLite consensus disorder prediction 604 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01454 Vifa-Chr2 393281057 393290920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01454 53 629 Receptor kinase-like Gene Family AT1G70520 37.819 9.67e-125 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g01454 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01454 - - gmx:100801131 861.677