Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01453 ATGGTGCTGCAACTTAAGCTAGTCTTCACAACGTTGGTCTGTTGTTGGAACATAATAATTAGTTATAACTATGTAGCTGGAGATTCACAAACAAGTATAGTATTAAACAGTGGATGCAGCACATATAACGCATCAAATTTACGTAGCTTCTATGCAAACATTAATGGAACATTTTCAGATTTGAGAAATCAAATTAGCAATGGAAGCAAACACTTTGCAACAGCACAAGAAGCAAGAGGAGAGGTGATAGTATATTCTCTTTTTCAATGCAGAAATTACCTCTCCATAAGGGATTGTCTTGCTTGCTTCAACACCGCTTCTGCTAAAATTCGTAACTGCTCAGCTTCCAATGGTGCTAGACTCATCTACGATGGCTGTTTCTTAAGGTACGAGAGTGAAAGATTCTATGATCAAACAAATCAACCTGGGGGTGGTATATTATGTGGTAACAAGACTGCAAAGGAAGGTTCCTCTTTTCAAACAATTGGACAAAAAGTGCTAATGGATCTCCAATTAGCAACACCAAAAGTTAAAGGCTTTTTTGCAGCTACTAAGACAGAGGTGAATCCTGGTAGCAATAGTTCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACAGAAAGTACTTGTCTTGATTGCATGACAGTTGGATACAACAACTTGCAAACTTGTCTTCCTAATACAGATGGTAGAGCATATGATGCAGGGTGTTTTATGAGATACTCAGAAAAACCCTTTTTTACTGATAATCAAGCCATTGATATCACAACCTATTTAAGTCAAGGTGGTTCAAGTAACAAATGGGCCATTATAGGTGGTGTTATTGGAGGTGTAGGTCTTGTTGCAATCATTCTTGCAATTTTAGCTTGGAGACAATACAGAAAACCCAAGAGAGCTCCTAGAGGAAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAGTGATTTGAAAGCTGCAACAAAAAACTTCAGTGAAGAAAATAAACTGGGAGAAGGAGGATTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAATGTTGTAGCAGTCAAGAAACTAGTTTTGGGAAAATCCAGCAAGATAGACAATGATTTTGAAAGTGAAGTAAAGCTTATAAGCAATGTTCATCATAGGAATCTTGTTAGACTTCTTGGTTGTTGCAGTAAAAAACAAGATAGAATCCTTGTTTATGAATACATGGCAAATAGCAGCCTAGACAAATTCTTATTTGGTGGAAAACAAGGTTCCCTCAATTGGAAACAAAGGTGTGATATAATTTTAGGCACAGCAAGGGGACTGGCCTATCTTCATGAAGAATTCCACATTTCCATTATACATAGAGATATAAAGAGTAGCAATATCCTCCTTGATGATAATCTTCATCCTAAAATTGCTGATTTTGGATTGGCACGACTTTTGCCGGGGGATCGATCTCATCTAAGCACAGGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCTATTCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCTTAGAAATCATAAGTGGTCAAAAGAGTACAGAAGTAAAGGAAGATGATGACGGTGAATACCTTCTTCAAAAATCATGGAAACTGCATGAGAGAGGCATGCACTTGGAGCTAATGGACAAGACCTTAGACCCTAATGACTATGATCCAAAAGAAGTGAAGAAAATGATAGATATTGCTTTACTATGCACTCAAGCATCAGCAGGAATGAGACCAACAATGTCAGAAGTAGTAGTCCTCCTCCAAACCAGTAGTTTAATGGAGCACATACAACCAACTATGCCTGTGTTTGTAGATACGAATCTTAGGTCTCGTGAAGGACACTCTACCTCAACTGGTTCTTCTACATCTAATGCTACTGCCTCATTTTCTATTTTATCAGCTCGGTGA 1947 0.3821 MVLQLKLVFTTLVCCWNIIISYNYVAGDSQTSIVLNSGCSTYNASNLRSFYANINGTFSDLRNQISNGSKHFATAQEARGEVIVYSLFQCRNYLSIRDCLACFNTASAKIRNCSASNGARLIYDGCFLRYESERFYDQTNQPGGGILCGNKTAKEGSSFQTIGQKVLMDLQLATPKVKGFFAATKTEVNPGSNSSIYAIAQCVETATESTCLDCMTVGYNNLQTCLPNTDGRAYDAGCFMRYSEKPFFTDNQAIDITTYLSQGGSSNKWAIIGGVIGGVGLVAIILAILAWRQYRKPKRAPRGNILGATELKGPVNYKYSDLKAATKNFSEENKLGEGGFGDVYKGTLKNGNVVAVKKLVLGKSSKIDNDFESEVKLISNVHHRNLVRLLGCCSKKQDRILVYEYMANSSLDKFLFGGKQGSLNWKQRCDIILGTARGLAYLHEEFHISIIHRDIKSSNILLDDNLHPKIADFGLARLLPGDRSHLSTGVAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEVKEDDDGEYLLQKSWKLHERGMHLELMDKTLDPNDYDPKEVKKMIDIALLCTQASAGMRPTMSEVVVLLQTSSLMEHIQPTMPVFVDTNLRSREGHSTSTGSSTSNATASFSILSAR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01453 648 FunFam Cysteine-rich receptor-like protein kinase 2 143 247 - -
Vifa2g01453 648 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Vifa2g01453 648 Pfam Salt stress response/antifungal 148 244 IPR002902 -
Vifa2g01453 648 FunFam Cysteine-rich receptor-like protein kinase 2 31 135 - -
Vifa2g01453 648 CDD STKc_IRAK 335 601 - -
Vifa2g01453 648 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Vifa2g01453 648 Pfam Protein kinase domain 330 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01453 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vifa2g01453 648 FunFam Cysteine-rich receptor-like protein kinase 2 294 405 - -
Vifa2g01453 648 Gene3D Phosphorylase Kinase; domain 1 298 405 - -
Vifa2g01453 648 SUPERFAMILY Protein kinase-like (PK-like) 314 614 IPR011009 -
Vifa2g01453 648 ProSiteProfiles Protein kinase domain profile. 329 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01453 648 Gene3D Transferase(Phosphotransferase) domain 1 406 613 - -
Vifa2g01453 648 FunFam Cysteine-rich receptor-like protein kinase 2 406 608 - -
Vifa2g01453 648 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Vifa2g01453 648 Gene3D - 31 135 IPR038408 -
Vifa2g01453 648 Gene3D - 145 247 IPR038408 -
Vifa2g01453 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 635 - -
Vifa2g01453 648 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Vifa2g01453 648 SMART serkin_6 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01453 648 MobiDBLite consensus disorder prediction 623 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01453 Vifa-Chr2 393087911 393096115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01453 18 648 Receptor kinase-like Gene Family AT1G70520 36.137 8.02e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g01453 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01453 - - gmx:100801131 890.567