Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01451 ATGATTTGTGGAACTCAAACAGCAAATGGAGCAGCTGCTTTTACTGCAGCTGCACAACAACTCCTACTGGATCTACAAACAGCTACACCCAAAATTCCTGGTTTCTTTGCAGCTACAAAGACACCAGTTTCTGGAACTGGAAATGCAATATATGCCATTGCACAATGTGCTGAATCAGTCACTCAAAATGGTTGTTTAGATTGCTTGACAGTTGGATTCAACAACATACAGAGCTGTTTTCCTAACACAGATGGTACAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAAACATCTTTCTTTGCTGATAACCAGACCATTGATATTACACCCTTCCTTAAACAAGGTTCAAGTAACAAGGGAGCCATTATTGGTGGTGTTGTTGGAGGTGTAGTAGCCCTTATTGTGATCCTCATTGCACTATTTGTTTGGCTTAGGCTCTACAAGAAACCCAAGAGACATCATAGAGGTGACATATTAGGAGCAACTGAGTTGAAAGGTCCACTTACTTACCGATATAACGATTTGAAGTCTGCAACAAAAAATTTTAACGACGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGAACTCTGAAAAATGGTAAAGTAGTTGCTGTCAAGAAATTGATTTTAGGTCATTCTGGGAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTCATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGCTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAAGAGCCTTGACAGATTCTTATTCGGTGAAAAGAAGGGTTCCCTTAATTGGATTCAAAGAGATATAAAGACTAACAACATCCTCTTGGATGATGATCTTCAACCTAAAATTGCTGATTTCGGGTTGGCGAGACTTTTACCAGAAGATCAATCTCATCTCAGCACGAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATCCATGGTCAGTTATCAGTGAAGGCTGATATCTACAGTTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTAGCGAGTTAAGAGATGATGCTGATGGGGAATTCCTTCTTCAAAAGGCTTGGAAACTATATGAGAAAGAAAGACACTTGGAGTTAGTTGACAAGACATTGAACACTAGTGACTATGATGCACAAGAGGTGAAAAAAGTTATAGAGATTGCATTACTTTGCACTCAAGCAACAGCTGCTACAAGACCAACTATGTCTGAAGTACTAGTTCTACTCAAAAGCAAGAGTTTTGTGGAGCATATGAAACCAACCATGCCTGTGTTTGTTAACACTAACTTAAGACCTCGGACAGATACCTCTACCTCAACTGCTTCTTCAACATCTAATGCTACTGTTTCCACTTCTATATTATCAGCTAGGTGA 1437 0.3932 MICGTQTANGAAAFTAAAQQLLLDLQTATPKIPGFFAATKTPVSGTGNAIYAIAQCAESVTQNGCLDCLTVGFNNIQSCFPNTDGTAFDAGCFMRYSETSFFADNQTIDITPFLKQGSSNKGAIIGGVVGGVVALIVILIALFVWLRLYKKPKRHHRGDILGATELKGPLTYRYNDLKSATKNFNDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEKKGSLNWIQRDIKTNNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADIYSFGVVVLEIISGQKSSELRDDADGEFLLQKAWKLYEKERHLELVDKTLNTSDYDAQEVKKVIEIALLCTQATAATRPTMSEVLVLLKSKSFVEHMKPTMPVFVNTNLRPRTDTSTSTASSTSNATVSTSILSAR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01451 478 SUPERFAMILY Protein kinase-like (PK-like) 168 463 IPR011009 -
Vifa2g01451 478 Gene3D Phosphorylase Kinase; domain 1 150 260 - -
Vifa2g01451 478 Pfam Salt stress response/antifungal 3 98 IPR002902 -
Vifa2g01451 478 Gene3D - 1 101 IPR038408 -
Vifa2g01451 478 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Vifa2g01451 478 MobiDBLite consensus disorder prediction 448 478 - -
Vifa2g01451 478 ProSiteProfiles Protein kinase domain profile. 184 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01451 478 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 280 466 - -
Vifa2g01451 478 FunFam Lectin-domain containing receptor kinase A4.3 280 450 - -
Vifa2g01451 478 FunFam Cysteine-rich receptor-like protein kinase 2 150 260 - -
Vifa2g01451 478 Gene3D Transferase(Phosphotransferase) domain 1 261 450 - -
Vifa2g01451 478 ProSiteProfiles Gnk2-homologous domain profile. 1 101 IPR002902 -
Vifa2g01451 478 Pfam Protein tyrosine and serine/threonine kinase 187 277 IPR001245 GO:0004672|GO:0006468
Vifa2g01451 478 Pfam Protein kinase domain 281 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01451 478 SMART serkin_6 184 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01451 478 FunFam Cysteine-rich receptor-like protein kinase 2 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01451 Vifa-Chr2 392889703 392891832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01451 35 478 Receptor kinase-like Gene Family AT4G23320 38.382 3.21e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g01451 Pkinase 6.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01451 - - gmx:100813585 700.664