Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01450 ATGAAAATATTTGGTGTTAACACCCCCTTCTCTAAACCAGGCTATCCTCGAGCATTGGTAGAGTACGAGAGCAATGGATTCTTCGACCAAACAACTCTACCTGGAAACAGTATGATTTGTGGAACTCAAACAGCAAATGGAGCAGCTGCTTTTACTGCAGCTGCACAACAACTCCTACTGGATCTACAAACAGCTACACCCAAAATTCCTGGTTTCTTTGCAGCTACAAAGACACCAGTTTCTGGAACTGGAAATGCAATATATGCCATTGCACAATGTGCTGAATCAGTCACTCAAAATGGTTGTTTAGATTGCTTGACAGTTGGATTCAACAACATACAGAGCTGTTTTCCTAACACAGATGGTACAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAAACATCTTTCTTTGCTGATAACCAGACCATTGATATTACACCCTTCCTTAAACAAGGTTCAAGTAACAAGGGAGCCATTATTGGTGGTGTTGTTGGAGGTGTAGTAGCCCTTATTGTGATCCTCATTGCACTATTTGTTTGGCTTAGGCTCTACAAGAAACCCAAGAGACATCATAGAGGTGACATATTAGGAGCAACTGAGTTGAAAGGTCCACTTACTTACCGATATAACGATTTGAAGTCTGCAACAAAAAATTTTAACGACGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGAACTCTGAAAAATGGTAAAGTAGTTGCTGTCAAGAAATTGATTTTAGGTCATTCTGGGAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTCATAAGTAATGTTCATCACAGGAATTTAGTTCGACTTCTCGGATGCTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAAGAGCCTTGACAGATTCTTATTCGGTGAAAAGAAGGGTTCCCTTAATTGGATTCAAAGAGATATAAAGACTAACAACATCCTCTTGGATGATGATCTTCAACCTAAAATTGCTGATTTCGGGTTGGCGAGACTTTTACCAGAAGATCAATCTCATCTCAGCACGAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATCCATGGTCAGTTATCAGTGAAGGCTGATATCTACAGTTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTAGCGAGTTAAGAGATGATGCTGATGGGGAATTCCTTCTTCAAAAGGCTTGGAAACTATATGAGAAAGAAAGACACTTGGAGTTAGTTGACAAGACATTGAACACTAGTGACTATGATGCACAAGAGGTGAAAAAAGTTATAGAGATTGCATTACTTTGCACTCAAGCAACAGCTGCTACAAGACCAACTATGTCTGAAGTACTAGTTCTACTCAAAAGCAAGAGTTTTGTGGAGCATATGAAACCAACCATGCCTGTGTTTGTTAACACTAACTTAAGACCTCGGACAGATACCTCTACCTCAACTGCTTCTTCAACATCTAATGCTACTGTTTCCACTTCTATATTATCAGCTAGGTGA 1548 0.396 MKIFGVNTPFSKPGYPRALVEYESNGFFDQTTLPGNSMICGTQTANGAAAFTAAAQQLLLDLQTATPKIPGFFAATKTPVSGTGNAIYAIAQCAESVTQNGCLDCLTVGFNNIQSCFPNTDGTAFDAGCFMRYSETSFFADNQTIDITPFLKQGSSNKGAIIGGVVGGVVALIVILIALFVWLRLYKKPKRHHRGDILGATELKGPLTYRYNDLKSATKNFNDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEKKGSLNWIQRDIKTNNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADIYSFGVVVLEIISGQKSSELRDDADGEFLLQKAWKLYEKERHLELVDKTLNTSDYDAQEVKKVIEIALLCTQATAATRPTMSEVLVLLKSKSFVEHMKPTMPVFVNTNLRPRTDTSTSTASSTSNATVSTSILSAR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01450 515 Pfam Protein kinase domain 318 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01450 515 SMART serkin_6 221 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01450 515 SUPERFAMILY Protein kinase-like (PK-like) 205 499 IPR011009 -
Vifa2g01450 515 Gene3D - 36 138 IPR038408 -
Vifa2g01450 515 Gene3D Transferase(Phosphotransferase) domain 1 298 487 - -
Vifa2g01450 515 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Vifa2g01450 515 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 503 - -
Vifa2g01450 515 ProSiteProfiles Protein kinase domain profile. 221 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01450 515 MobiDBLite consensus disorder prediction 485 515 - -
Vifa2g01450 515 FunFam Lectin-domain containing receptor kinase A4.3 316 487 - -
Vifa2g01450 515 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Vifa2g01450 515 FunFam Cysteine-rich receptor-like protein kinase 2 35 138 - -
Vifa2g01450 515 FunFam Cysteine-rich receptor-like protein kinase 2 187 297 - -
Vifa2g01450 515 Pfam Protein tyrosine and serine/threonine kinase 224 314 IPR001245 GO:0004672|GO:0006468
Vifa2g01450 515 Gene3D Phosphorylase Kinase; domain 1 187 297 - -
Vifa2g01450 515 ProSitePatterns Protein kinases ATP-binding region signature. 227 250 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01450 Vifa-Chr2 392888983 392891832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01450 23 515 Receptor kinase-like Gene Family AT1G70520 35.217 1.91e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g01450 Pkinase 7.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01450 - - gmx:100813585 733.021