Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01446 ATGAAGCTTTCAACGTCAGGCTTGGGTCATCAGGGACATGAAGGAGGAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTATCTGCCACAACGAACCGTGAAATCGATGGGCACATACCGAATTACCCGAGCTTGCCACCTCAGTTGGTTTGCCAGCTTCATAATGTCACTATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCGTTGACTCCGGAGGAGCAAAAGGATACATTTCTTCCTATGGAATTGGGAATTCCAAGTAAGCAGCCCTCTAACTATTTTTGCAAGACTTTAACCGCCAGTGACACCAGCACGCATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTAGAATGGAAGTTTCGACACATTTTTCGAGGTCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGCATATTTGTTAGTGCCAAGAGACTGGTTGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCCAATAGACCACAAACTGTAATGCCATCATCAGTTTTGTCCAGCGACAGTATGCACATTGGACTTCTGGCAGCCGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGCTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGGATAAGTGATCTGGATGCGGTTCGGTGGCCGAGTTCTCATTGGCGTTCTGTTAAGGTCGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTTTCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCATTGTTTCCCCTCAGATTGAAACGACCGTGGCATCCTGGCACCTCTTCTTTGCTTGATGGAAGAGATGATGTGGCAAATGGTCTGATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCTCTTAATTTTCAAGGTGCTGGTGGCATGTTACCATGGATGCAGCAGAGACTAGATCCAACTTTACTCGGAAACGATCATAATCAACAATATCAAGCCATGTTGGCGGCAGCTGGAATGCAGAATATGGGTAGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACAGCCTATCCAGTACCTTCAGTCTGGAAACAATAATTCGCCTTTGCAACTTCAACAACCACACGCAATTCCACAATCAGTGTCCTCTAATATGATGCAACCACAAGGCCAAGTGCTTACTGAAAACCTGTCTCAGCACCTCCTTCAGAAAACAAATAACAATCAAGAAGTCCAAGGTCAACAGCAGCAACATGGTTATCAAGATACACTTCTTATTCAAAATGATCAACTCCATCAGCGACAACAACAACAGTCCAATGCGCCATCACCATCGTATACAAAACAAGATTTCCTGGATTCAAACTTGAAGTTTCCTGCTTCGGCTTCCTCCGGACAAAACATGCTTGGTTCGCTTTGCAATGAAGGAACTGGCAATCTCTTGAATCTATCAAGTCTATCCAGAAGCGGTCAGTCGTTGATGACCGAACAGTTACCCCAACAATCATGGACTCAGAAGTATGGGAATATGCAGGTCAACGCGTTTAGCAACACAATGTCGCATGCACAATTTTCTGGAAAAGATTTGGCAGTGGTGCCACATTGTGATTCAGATACTCAAAACCATACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTACTCCCCACCACTGTCCAAGGTTACACCACTTCGTCCGCTGACACTGGTGCGTCAACGATGCAGTTAGGGGAGTCGGGATTTCAGAGTTCTCTATACGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAAGCGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGTTCGGTTGGTCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCGAAATACTTTCACCGGAAGATATTCAGAAGAAGATGGGAGAGGAAGCGGTAGAAACGCTTGCGCTAGGTTCAGGACAGAGGCTCAACGGCACTGGTGAATCTCACCACGGGGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2559 0.4615 MKLSTSGLGHQGHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDDVANGLMWMRGGPADQGLNSLNFQGAGGMLPWMQQRLDPTLLGNDHNQQYQAMLAAAGMQNMGSGYLMRPQMMNFQQQPIQYLQSGNNNSPLQLQQPHAIPQSVSSNMMQPQGQVLTENLSQHLLQKTNNNQEVQGQQQQHGYQDTLLIQNDQLHQRQQQQSNAPSPSYTKQDFLDSNLKFPASASSGQNMLGSLCNEGTGNLLNLSSLSRSGQSLMTEQLPQQSWTQKYGNMQVNAFSNTMSHAQFSGKDLAVVPHCDSDTQNHTLSGVNIDSSGLLLPTTVQGYTTSSADTGASTMQLGESGFQSSLYACMQDSSSFLQNAEQSDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIEILSPEDIQKKMGEEAVETLALGSGQRLNGTGESHHGVSGQPPSIGSLEY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01446 852 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
Vifa2g01446 852 MobiDBLite consensus disorder prediction 546 566 - -
Vifa2g01446 852 FunFam Auxin response factor 128 232 - -
Vifa2g01446 852 CDD B3_DNA 129 230 IPR003340 GO:0003677
Vifa2g01446 852 MobiDBLite consensus disorder prediction 827 852 - -
Vifa2g01446 852 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa2g01446 852 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Vifa2g01446 852 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Vifa2g01446 852 SUPERFAMILY CAD & PB1 domains 721 799 - -
Vifa2g01446 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 812 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa2g01446 852 MobiDBLite consensus disorder prediction 827 843 - -
Vifa2g01446 852 Gene3D - 128 231 IPR015300 -
Vifa2g01446 852 Gene3D - 294 366 - -
Vifa2g01446 852 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Vifa2g01446 852 Pfam AUX/IAA family 714 806 IPR033389 -
Vifa2g01446 852 SMART B3_2 130 232 IPR003340 GO:0003677
Vifa2g01446 852 Gene3D - 721 814 - -
Vifa2g01446 852 FunFam Auxin response factor 720 814 - -
Vifa2g01446 852 FunFam Auxin response factor 294 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01446 Vifa-Chr2 391414269 391420536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01446 100 816 B3 DNA Binding Superfamily AT5G37020 67.631 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa2g01446 AUX_IAA 8.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01446 - - gmx:100784373 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01446 2 391414269 391420536 Vifa2g01446 2 391414269 391420536 ECH
Vifa2g01446 2 391414269 391420536 Vifa1g01772 1 288255705 288263219 PCT