Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01434 ATGCGCAAATGCTCTCAAACTGGTTTGATTAGGGATAATGAATATGAAAGACAAGACGAATTACAGCATGAGACTTGTGATTTGCTTGTGTTTTCAGCCACAGATGATGTTATAGCTTTCAAAGAGGCTGTTGAAAAACACAATCATGATGTCAATGAGGTCGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGAGATATGAAGAGAGGACACCTCTCATGATTGCTTCCTTATTCGGAAGCAAGGGTGTATTGTCTTATATTCTCGAAACCGGCCGTGTTGATGTTAACCAAGCGCGCGGATCCGATAGGGCAACCGCTCTTCACTGTGCTGTTTCTGGTTGTTCTCCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCTGATGTTAATTCTGTTGATGTGAACGGTAACCGGTGCATTGACTTGATTGTCATGATGTCTAATAGTATCTCCGGTTCTAGGATGAGGAAACTGCAAGCCATAGTAGAAGGTACTGATGACATTGATGATGATGACGATTTTATTAAGGAAGTAGGTTTTCAAATGGAGAAGCAGCAAGAAGATATCGGTACACCTCGAATTAAGAAGAAAGATTATCCGATTGATCTATCCCTACCCGACATAAATAATGGAATATATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGACTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATCATATATCCTTACACCTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTCTGTAAGGATGAGGCCGAATGCACCCGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAGCTTCGCCCGATGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTAGTGCTTCTTCAATGGATTATTTCACATTGATCTCTCCGTCCAGTTCGACACAATCCATGTCGACACCGCCTTTGACTCCATCTGCAGCGTCATCTCCTGCAGGTGGAACCATGTGGCCTTCTCAGTCTCATGCTGCAGTTCCTACACTTCAGTTGCCGAGAAGCAGATTGAAAACTGCACTGAATGCTAGAGATGGTACTGAATTTCTCGAACTTGAAAATCGCCTTATGCAGAAGCTAATGATTGAAGAGATGACATGTCTTTCATTCCCTTCAAATAGGCTTGCAGGTGTGAATCCTGCTAGCCTCGAAGACACTCTCGGCTCTCAGATACAATCTCCAACATCAATTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTCACCAATTCAAATGTGATTGGATCACCACAGGTCACTGTTGATCCCTCTAAGAATTCAAAAAACAATGTCTTCGCGAAGCGGAGCCAGAGCTTTATCGAGTGCAGCAGCATGGAGAGCTTTAGTTCCAATCTTCCTTCTGCTACCTCGGTTGCTATGCAGCCATATACTAACTTCTCTGGTTGGAGCTCCCCTGATGGAAAATTAGACTGGTCCATTCGTGGCGATGAACGGAATAAGATGAGGAAGTCTTATTCTTTCGGCTTTCAAAATCAAAGTTGCTATTCAACAATGGTGGCACAAAATACTGATGAACAAGGTGTATTATTAAACCTGGAATCATGGGTTAATTCACTAGTGAAGGATGCACCAACAGCGAAATCGGATCAATATTGTGTTGAAGTGTAA 1842 0.4338 MRKCSQTGLIRDNEYERQDELQHETCDLLVFSATDDVIAFKEAVEKHNHDVNEVGLWYGRRIGSKEMRYEERTPLMIASLFGSKGVLSYILETGRVDVNQARGSDRATALHCAVSGCSPASAEVIKLLLDASADVNSVDVNGNRCIDLIVMMSNSISGSRMRKLQAIVEGTDDIDDDDDFIKEVGFQMEKQQEDIGTPRIKKKDYPIDLSLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPIIYPYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAECTRRVCFFAHKPEELRPMYASTGSALPSPISYSNSPSASSMDYFTLISPSSSTQSMSTPPLTPSAASSPAGGTMWPSQSHAAVPTLQLPRSRLKTALNARDGTEFLELENRLMQKLMIEEMTCLSFPSNRLAGVNPASLEDTLGSQIQSPTSIHVHPNVTQQLWGFSSDLTNSNVIGSPQVTVDPSKNSKNNVFAKRSQSFIECSSMESFSSNLPSATSVAMQPYTNFSGWSSPDGKLDWSIRGDERNKMRKSYSFGFQNQSCYSTMVAQNTDEQGVLLNLESWVNSLVKDAPTAKSDQYCVEV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01434 613 SMART ANK_2a 70 100 IPR002110 GO:0005515
Vifa2g01434 613 SMART ANK_2a 105 137 IPR002110 GO:0005515
Vifa2g01434 613 SMART c3hfinal6 298 321 IPR000571 GO:0046872
Vifa2g01434 613 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Vifa2g01434 613 Gene3D - 22 171 IPR036770 -
Vifa2g01434 613 SUPERFAMILY Ankyrin repeat 35 147 IPR036770 -
Vifa2g01434 613 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Vifa2g01434 613 PANTHER UNKEMPT FAMILY MEMBER 31 601 IPR045234 -
Vifa2g01434 613 MobiDBLite consensus disorder prediction 361 387 - -
Vifa2g01434 613 FunFam Zinc finger CCCH domain-containing protein 66 221 289 - -
Vifa2g01434 613 ProSiteProfiles Ankyrin repeat profile. 105 140 IPR002110 GO:0005515
Vifa2g01434 613 Gene3D - 264 326 - -
Vifa2g01434 613 Pfam Ankyrin repeats (3 copies) 63 139 IPR002110 GO:0005515
Vifa2g01434 613 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 288 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01434 Vifa-Chr2 389108374 389110215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01434 20 613 C2H2 Transcription Factor Family AT5G12850 38.729 1.43e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g01434 Ank_2 3.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01434 - - psat:127084564 901.353