Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01421 ATGGATGCCACGCTCTCCGTTCTCAAGGATTACTTCGGGTTTATGAGTTTTCGACCTTATCAGCAAGAGGTTATTGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCGTTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAAGATCAGGTTATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCGAGTGCTCAGAAGGATTATACTATTCAGGGTAAAGCTGAGCGTGGTCAATTTGACATTCTGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGATGAATAATCCTTACATTGTTGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCAATTTAACCGAGGACAATATTTTATTGACGAGCTTGTTGAAGAAATTTCAAAAGAAGTTGCTAATGGTTCAACTATTATTTACTGCACAACAATCAAAGATGTAGAACAGATATATAAGTCAGTAATGAACGTCGGTATAAATGCTGGAATGTACCATGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCACAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGCCCTAAAAATCTAGAGTCCTACTACCAGGAAAGTGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGTGATTATTATGCTGCAGATTTAAAATCGGAAAACCAAAAAAAAGCTGTTACGGAGTCATTGCTTGAAGCTCAACGCTATTGTTTGACGGCAACTTGCAGAAGAAAGTTCTTGCTAGAACACTTTGGAGAAAAATTTGCAGCTGATCGATGTGGAAACTGTGATAACTGCACGGTCTTGAGGCAACATCGTGACATGTCAAAAGAAGCCTTTCTTCTACTGGCTTGCATTCATTCATGCAAGGGAAGATGGGGCCTTAATATGCCGATTGACATCCTGCGCGGTTCTCGAGCAAAGAAAATAATGGAAGCTCAATATGACAAGCTTCCACTTCATGGACTTGGGAAAGCATACCAAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCTAGGTTATTTGAAGGAGTTTGTGACTGATGTGTACAGAAATGTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCATGTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGGTTGGTGAGCTCGCAGAAGAGGAAACTAGAAGCGCAGAAGAATTCAAAATTTTGGCCGCTTCAGAATCTGAAGGTTTTTCAGAGGCTGAAGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAATCTTGCAAGGAGTGTTGGAACAGCTCCATATGCTTTATGCGGTGATCAAACAATCAGAAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGGCTAGCAAATATTGATGGTGTGAATCAGCATCTAGTAACAAGATATGGAGACCATTTTCTTCAAGCTATTCGGAAACTATCCCAAGAATTAAAACTATCATTGGATGGTGAACCGGTACTCCAAACTAGTGAAGTACGGAAAGTATCTCCACTAGTAACAATCAAATCAACGAAGTTGTCAGGAGCAAAGCTTGAAGCATGGAAAATGTGGCATGAAGAAGGTCTTTCTATTCAGAGGATTGCCAACTTTCCAGCTAGAGCAGCTCCTATTCAAGAACAAACTGTTGTACAGTATCTGCTGGACGCTGCCCTAGATGGATTACCTATTGATTGGACAAGACTCTGTGAGTCGATAGGGCTGAAACAAGATTACACATCTGCAATTCGGGGAGCTATTGTAAAAGCTGGATCTGCTGATAAGTTGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACGTATCCGCACATCAAGGTTTACTTAACAATGCAAACCTGTGGAGTATCCTTAGAAAGTATCCATTCTGGGAAAGACGGTGAAGCTGTAAACAATGCATCAAATTCTTCGGAACCATCTTCAGTAACACACGATGCAGAAAGTCATCTTCAAGCTAACGTTGCTACCGAAAGTATAATGGAAATTAATGAAGTGGTACCTTCTGGACCAGTCGATGTTTGTCCGGTACAAGAGTTTCCAACAAGCAAACGACTGAAAGTCAGCGAAACAAAGGAGGTGAATATAATTAAATTGAAAGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGACTGATATGTTGGAGCGCTTCAATGGATCCAATGAAGATTCCATTGTTGAACTGCTAAGTTCCCTTGAGTGTGACTTTTTGATATATAAGAAAAGTAACGTGTACAGGGCTATGTAA 2616 0.4006 MDATLSVLKDYFGFMSFRPYQQEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHYVPYVGLTATATEKVRFDITNSLKMNNPYIVVGSFDRPNLFYGVKQFNRGQYFIDELVEEISKEVANGSTIIYCTTIKDVEQIYKSVMNVGINAGMYHGQMDGKSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASACWLYYTRSDFSKGDYYAADLKSENQKKAVTESLLEAQRYCLTATCRRKFLLEHFGEKFAADRCGNCDNCTVLRQHRDMSKEAFLLLACIHSCKGRWGLNMPIDILRGSRAKKIMEAQYDKLPLHGLGKAYQANWWKALGHQLISLGYLKEFVTDVYRNVSVSSKGEQFLASCRPDYQPPLVLPLVGELAEEETRSAEEFKILAASESEGFSEAEGQLYQMLLEERLNLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTRYGDHFLQAIRKLSQELKLSLDGEPVLQTSEVRKVSPLVTIKSTKLSGAKLEAWKMWHEEGLSIQRIANFPARAAPIQEQTVVQYLLDAALDGLPIDWTRLCESIGLKQDYTSAIRGAIVKAGSADKLKPIKNELPEEITYPHIKVYLTMQTCGVSLESIHSGKDGEAVNNASNSSEPSSVTHDAESHLQANVATESIMEINEVVPSGPVDVCPVQEFPTSKRLKVSETKEVNIIKLKATESSVVEWLKNLDEGATLTDMLERFNGSNEDSIVELLSSLECDFLIYKKSNVYRAM 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01421 871 MobiDBLite consensus disorder prediction 742 759 - -
Vifa2g01421 871 Pfam RecQ zinc-binding 326 375 IPR032284 -
Vifa2g01421 871 CDD DEXHc_RecQ 5 175 - -
Vifa2g01421 871 ProSiteProfiles HRDC domain profile. 516 596 IPR002121 GO:0003676
Vifa2g01421 871 FunFam ATP-dependent DNA helicase 512 601 - -
Vifa2g01421 871 CDD SF2_C_RecQ 176 310 - -
Vifa2g01421 871 SMART RQC_2 382 486 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa2g01421 871 MobiDBLite consensus disorder prediction 740 759 - -
Vifa2g01421 871 Pfam Helix-turn-helix domain 627 724 IPR029491 -
Vifa2g01421 871 NCBIfam RecQ family ATP-dependent DNA helicase 141 433 IPR004589 GO:0004386|GO:0006310
Vifa2g01421 871 Gene3D - 1 175 IPR027417 -
Vifa2g01421 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 423 IPR027417 -
Vifa2g01421 871 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 636 - -
Vifa2g01421 871 Pfam HRDC domain 521 586 IPR002121 GO:0003676
Vifa2g01421 871 SMART helicmild6 220 301 IPR001650 -
Vifa2g01421 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 192 346 IPR001650 -
Vifa2g01421 871 Pfam DEAD/DEAH box helicase 19 142 IPR011545 GO:0003676|GO:0005524
Vifa2g01421 871 SUPERFAMILY HRDC-like 515 592 IPR010997 GO:0000166|GO:0044237
Vifa2g01421 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 168 IPR014001 -
Vifa2g01421 871 SMART ultradead3 13 186 IPR014001 -
Vifa2g01421 871 Gene3D - 176 377 IPR027417 -
Vifa2g01421 871 Pfam Helicase conserved C-terminal domain 194 300 IPR001650 -
Vifa2g01421 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 315 IPR027417 -
Vifa2g01421 871 FunFam ATP-dependent DNA helicase 377 501 - -
Vifa2g01421 871 Pfam RQC domain 379 475 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa2g01421 871 SMART hrdc7 516 596 IPR002121 GO:0003676
Vifa2g01421 871 FunFam ATP-dependent DNA helicase 176 376 - -
Vifa2g01421 871 Gene3D - 378 502 IPR036388 -
Vifa2g01421 871 Gene3D HRDC domain 513 599 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01421 Vifa-Chr2 386584495 386592229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01421 12 314 Eukaryotic Initiation Factors Gene Family AT3G19760 22.714 5.01e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01421 K03654 - gmx:100797777 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01421 2 386584495 386592229 Vifa2g01421 2 386584495 386592229 ECH