Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01404 ATGTTTCTTTCGGAAGGTTACAAGCATCAAGTTGTTTTCGTTTTATGGTTTTGTTGCTATTTGGTACTTATTGCTGCACAGGAGAATATCACTGACCCTACCGAAGTTGAAGCATTAAAAGCCATAAAAGAAAGATTGATTGATCCTAACGGAAATTTGAGCAATTGGGAACACGGAGACCCGTGTACATCTCGCTGGACAGGAGTTTTATGTTTCAACGAAACATTAGTTGATGGCTATTTACATGTTCAAGAATTGCAACTAATGAATTTGAGCTTGTCCGGAAATTTGGCACCGGAAATTGGCAGCTTAGCTTATATGGAAAGATTGAACTTTATGTGGAACAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAATCTTTAGTCCTCTTGCTATTAAATGGAAATCTATTAACAGGTTCACTTCCAGATGAGCTCGGCTTTCTTCCGAATCTTGATAGAATACAAATCGATCAAAATAAAATATCAGGATCTCTACCAGCATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCAATTAGCGGCCAAATCCCACCGGAACTCTCGCGATTACCAAAGCTTGTTCACTTCCTTCTTGACAACAACAATTTATCAGGATTTCTTCCTCCTGAGCTATCCAAACTTCCAAGCCTACTTATACTTCAACTAGACAATAATAACTTCAAAGGAAATAGCATTCCAGATACTTATAGCAACATGTCAAAATTGTTGAAGTTGAGCCTTAAGAATTGCAACTTGCAAGGACCAATTCCCGACTTAAGCCGGATACCACGCCTTCTTTATCTCGACCTCAGTTCCAATCAGTTGAATGAATCAATTCCTTCCGATCTTTCACAAAACATCACAACCATTGATTTATCAAACAACAAACTTACGGGAACCATTCCGTCCTCATTTTCTACTCTTCCAAATCTTCAGAAATTGTCTCTTGCAAACAATTCATTGATCGGCAGTGTTCCTTCTACAATCTGGCAGGACAAGACTTTAAATGGAACAGAAAAATTTATCTTGGAGTTGGAAAATAATCAATTCACAACTGTATCAGGCAGTACCGATCTTCCTCCAAATGTCACAGTCTTGCTTCAAGGGAATCCTCTATGCTCAAATAACAGCCTGCGTCAGCTCTGTAGTTCTGAAGGTGTTAACAACACAGATGACCAAATTCCAACAAACGCCAATGGCTTTTGTCCGGCCCAATCGTGCCCACCACCTTACGAGTACTCTTTGGATTGTTTCTGTGCAGCCCCATTGCTTGTTGATTACCGACTGAAAAGTCCTGGATTTTCAGATTTCCTTCCATTTATTAATGAATTTGAGGTGTACCTGACTACTGGTCTTACTATAAATATGAGTCAGTTAAACTTTACTTTTCGGTGGGAGGCAGGACCTCGACTGAGAATGAACTTGAAGTTCTTTCCTATATATCTTGGTCAAAATAGTTCTCATACCTTCAATGAAACCGAGGTCGCACGAATTAAAAGCATGTTCACAGGATGGAATATTCCTGACAATGATTTGTTTGGGCCATATGAATTGATCAGCTTCAATATGGGTATTTACCAGAATGTTACTGCCACCTCTTCAAAATCAGGGATAAGTACAGGAGCAATAGTCGGCATAGTCTTGGGAGCAATTGCATGTGCAGTGACGTTGTCTGCAATTGTTACTCTTCTTATATTGAGAACAAAATTGAAAGATTACCGTGCAGTTTCCAACAAACGGCGTCACGTGTCTAAAATCTCGATAAAAATTGACGGTGTAAGGGCCTTTACTTACGGAGAATTGTCCTCCGCTACAAACAATTTTAGCAGCTCTGCTCAAGTCGGACAAGGGGGATACGGGAAGGTATATAAAGGTATTATATCCGATGGCACTGTTGTTGCCATTAAACGTGCACAAGAGGGGTCATTGCAAGGCGAGAAGGAGTTCCTTACGGAAATATCGTTACTATCAAGGTTACATCATCGCAACCTTGTTTCTTTGGTTGGATACTGTGATGAAGAAGGTGAACAGATGCTCGTTTATGAATATATGCCAAATGGCACGCTAAGGGATCACCTTTCTGTTACATCAAAAGAACCTCTGACTTTTATCACGAGATTGAAGATCGCACTAGGGTCAGCTAAAGGTCTCATGTATCTACACAATGAAGCTGATCCTCCAATATTTCATCGGGATGTCAAGGCCAGCAACATATTATTGGACTCTAAGCTCTCTGCAAAAGTGGCGGATTTTGGACTTTCACGTCTTGCCCCAGTTCCAGATATGGAAGGCATTGTGCCTGGTCATGTATCTACTGTGGTAAAAGGGACACCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACAGACAAGAGTGATGTTTACAGTCTCGGTGTCGTGTTTCTTGAACTTTTGACCGGAATGCACCCTATCTCCCATGGCAAAAATATTGTTAGAGAGGTCAATCTTTCATACCAAGCCGGTGTAATATTTTCAATCATCGACGAGCGAATGGGGTCTTACCCATCCGAGCACGTAGAGAAATTCTTGACATTGGCCCTCAAGTGTTGCAACGACGAGCCAGATAATCGACCTAAAATGGCAGAAGTAGTTAGAGAGCTTGAAAACATATGGAATGTAATGCCAGAATCAGATACAAGAAGAGCTGAATCTATAACCAGTGTGAGTGATTCAAGCAAAGCAATGAGTACACCATCTTCATCATCTGCTATAAGGACTCCTTTTGTATCAGGTGATGTGTCTGGCAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2850 0.406 MFLSEGYKHQVVFVLWFCCYLVLIAAQENITDPTEVEALKAIKERLIDPNGNLSNWEHGDPCTSRWTGVLCFNETLVDGYLHVQELQLMNLSLSGNLAPEIGSLAYMERLNFMWNKITGSIPKEIGNIKSLVLLLLNGNLLTGSLPDELGFLPNLDRIQIDQNKISGSLPASFANLNKTKHFHMNNNSISGQIPPELSRLPKLVHFLLDNNNLSGFLPPELSKLPSLLILQLDNNNFKGNSIPDTYSNMSKLLKLSLKNCNLQGPIPDLSRIPRLLYLDLSSNQLNESIPSDLSQNITTIDLSNNKLTGTIPSSFSTLPNLQKLSLANNSLIGSVPSTIWQDKTLNGTEKFILELENNQFTTVSGSTDLPPNVTVLLQGNPLCSNNSLRQLCSSEGVNNTDDQIPTNANGFCPAQSCPPPYEYSLDCFCAAPLLVDYRLKSPGFSDFLPFINEFEVYLTTGLTINMSQLNFTFRWEAGPRLRMNLKFFPIYLGQNSSHTFNETEVARIKSMFTGWNIPDNDLFGPYELISFNMGIYQNVTATSSKSGISTGAIVGIVLGAIACAVTLSAIVTLLILRTKLKDYRAVSNKRRHVSKISIKIDGVRAFTYGELSSATNNFSSSAQVGQGGYGKVYKGIISDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLVGYCDEEGEQMLVYEYMPNGTLRDHLSVTSKEPLTFITRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNLSYQAGVIFSIIDERMGSYPSEHVEKFLTLALKCCNDEPDNRPKMAEVVRELENIWNVMPESDTRRAESITSVSDSSKAMSTPSSSSAIRTPFVSGDVSGSDLVSGVIPSIKPR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01404 949 SMART serkin_6 618 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01404 949 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Vifa2g01404 949 Pfam Leucine Rich repeats (2 copies) 295 335 IPR025875 -
Vifa2g01404 949 MobiDBLite consensus disorder prediction 901 928 - -
Vifa2g01404 949 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Vifa2g01404 949 FunFam Leucine-rich repeat receptor protein kinase EMS1 242 338 - -
Vifa2g01404 949 SUPERFAMILY Protein kinase-like (PK-like) 603 913 IPR011009 -
Vifa2g01404 949 Gene3D Ribonuclease Inhibitor 291 409 IPR032675 -
Vifa2g01404 949 Pfam Protein kinase domain 620 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01404 949 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vifa2g01404 949 Gene3D Transferase(Phosphotransferase) domain 1 694 914 - -
Vifa2g01404 949 Gene3D Ribonuclease Inhibitor 187 290 IPR032675 -
Vifa2g01404 949 SUPERFAMILY L domain-like 46 397 - -
Vifa2g01404 949 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Vifa2g01404 949 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01404 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vifa2g01404 949 CDD STKc_IRAK 624 890 - -
Vifa2g01404 949 PANTHER RECEPTOR-LIKE PROTEIN 55 41 890 - -
Vifa2g01404 949 SMART LRR_typ_2 152 175 IPR003591 -
Vifa2g01404 949 SMART LRR_typ_2 224 248 IPR003591 -
Vifa2g01404 949 SMART LRR_typ_2 272 296 IPR003591 -
Vifa2g01404 949 SMART LRR_typ_2 200 223 IPR003591 -
Vifa2g01404 949 SMART LRR_typ_2 318 342 IPR003591 -
Vifa2g01404 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Vifa2g01404 949 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 904 - -
Vifa2g01404 949 FunFam Leucine-rich repeat protein kinase family protein 582 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01404 Vifa-Chr2 383100666 383107664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01404 1 900 Receptor kinase-like Gene Family AT5G01950 56.645 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa2g01404 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01404 - - gmx:100786467 1462.97