Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01399 ATGTCTGTCAAGTCCATGGAAGCTTCAAATGCTCCTGAATTTCATGTATATTTCCTTACTTTATTGGTTGTTACCAATGTAACCCACTTCACCATTTTCAGTTTCTTCTTTAAAAATGCTACTTTGCCTTGTTTTTCACTTCAGGAAAACATGAAGGTTGGGAAAATTTACTCTAAATTCATGTCCATGAAGTTCTATTATGCTTCAATGGCTTCTTTTCTTTTTGTCATAGCTATTCTTTTCCCTTGTGTTATTGCCGATCTTAATTCCGACAAGCAAGCCCTTCTTGATTTTATCAATGCTGTGCCTCACCGTCGAAACCTGATGTGGAATACATCCGCCTCAATCTGTACATCTTGGGTTGGCATCACTTGCAATGAAGATAGAACTCGGGTAGCTAATGTCCGGCTCCCTGGAGTCGGACTAGTCGGCTCGATCCCATTAAATACACTCGGAAAGCTTGATGCTGTGAAAATTATCAGCCTTCGATCCAACCTACTCGGTGGAAACCTGCCTGCTGACATTGCTTCGCTCCCGTCTCTTCAGTATCTCTACCTCCAGCATAATAACTTTTCCGGTGAAATTCCTACCTCATTGTCACACCAACTAGTTGTTCTTGATTTGTCTTATAATTCTTTTGCCGGAAGAATTCCAAAGACGTTACAAAATTTTACAGAACTGAAAAGTTTGAATCTCCAAAACAACTCGCTATCTGGAAGCATACCGAATCTCAATGTTACTATGCTTGGTAATTTGAATTTAAGCTACAACAATTTAAGTGGACCTATCCCTTCAAAACTGCGTATCTATCCTAATTCGTCGTTTGAAGGAAACTCTGGTTTATGCGGACTGCCTCTAAAGCCATGCTCTACGATTCCACCTCCTCCTGTCTTGACTCCCACTCCATCATCCGCTCCGGGAAAAGGCAGCTCCAAAAATAAATTCAGTAAGGTAGCTATCATCGCCATTGCGGTTGGTGGAGCCGTGCTACTATTTTTTGTAGCTCTTGTTATTGTTCTTTGTTGTTTGAAGAAAGACGGTGATGCTGATGGAGGCTCTAGAGAAGTTAAAGCGAAGGGTAGTGGTGGCGGCGGTGGTGGTAGGGGCGAGAAGCCGAAAGAAGAGTTTGGTAGTGGAGTGCAAGAACCTGAGAAGAACAAATTGGTTTTCTTTGAGGGAAGTTCTTATAATTTCGATCTCGAAGATTTGCTGAGAGCTTCAGCAGAAGTTCTTGGAAAAGGTAGCTATGGTACCTCATATAAGGCTATATTGGAGGAGTCAATGACAGTTGTGGTGAAAAGGTTGAAAGAAGTTGTGGTTGGCAAAAAGGATTTTGAACAACAGATGGAAATTATGGGAAGGGTTGGACAACACCCGAATGCTGTACCGCTTCGAGCTTATTATTATTCGAAAGATGAAAAGCTTTTGGTTTATGACCATGTCCCGGCTGGCAACCTATCAACACTCTTGCATGGCAGTCGGGGAGGTGGAAGAAGTCCATTAGATTGGGACTCGAGAGTAAAAATATCGCTTGGAACTGCGAGAGGAATCGCCCACATCCATTCCGTTGGTGGTCCGAAATTCACACATGGAAATATCAAATCCTCAAATGTCCTCCTCAACCAAGATAATGACGGCTGCATTTCTGATTTCGGCCTAACCTCACTTATGAATGTTCCTGCAAACCCTTCTAGAGCTGCAGGTTACCGTGCTCCTGAGGTGATTGAAACCCGAAAGCACTCTCATAAATCAGATGTCTACAGCTTCGGTGTCCTCCTTCTAGAGATGCTAACAGGGAAAGCGCCTCTTCAATCACCAGGACGTGACGATATGGTTGATCTCCCTAGATGGGTCCAATCCGTCGTTCGGGAGGAGTGGACAGCCGAGGTTTTCGACGTCGAGCTAATGAGGTACCAAAACATCGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCATGTGTGGCGAAAATGCCTGATATGAGACCAAACATGGACGAGGTGGTGAGAATGATAGAAGAAATCCGGCTATCTGACTCAGAGAACCGACCATCTTCCGAAGAGAATAAATCTAAGGACTCAAATGTTCAAACTCCTTAG 2103 0.4346 MSVKSMEASNAPEFHVYFLTLLVVTNVTHFTIFSFFFKNATLPCFSLQENMKVGKIYSKFMSMKFYYASMASFLFVIAILFPCVIADLNSDKQALLDFINAVPHRRNLMWNTSASICTSWVGITCNEDRTRVANVRLPGVGLVGSIPLNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLQYLYLQHNNFSGEIPTSLSHQLVVLDLSYNSFAGRIPKTLQNFTELKSLNLQNNSLSGSIPNLNVTMLGNLNLSYNNLSGPIPSKLRIYPNSSFEGNSGLCGLPLKPCSTIPPPPVLTPTPSSAPGKGSSKNKFSKVAIIAIAVGGAVLLFFVALVIVLCCLKKDGDADGGSREVKAKGSGGGGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTSYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHPNAVPLRAYYYSKDEKLLVYDHVPAGNLSTLLHGSRGGGRSPLDWDSRVKISLGTARGIAHIHSVGGPKFTHGNIKSSNVLLNQDNDGCISDFGLTSLMNVPANPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVVRMIEEIRLSDSENRPSSEENKSKDSNVQTP 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01399 700 MobiDBLite consensus disorder prediction 677 691 - -
Vifa2g01399 700 Gene3D Transferase(Phosphotransferase) domain 1 481 699 - -
Vifa2g01399 700 FunFam pollen receptor-like kinase 1 373 480 - -
Vifa2g01399 700 Pfam Leucine rich repeat N-terminal domain 89 126 IPR013210 -
Vifa2g01399 700 SUPERFAMILY Protein kinase-like (PK-like) 409 683 IPR011009 -
Vifa2g01399 700 Gene3D Phosphorylase Kinase; domain 1 373 480 - -
Vifa2g01399 700 MobiDBLite consensus disorder prediction 677 700 - -
Vifa2g01399 700 PANTHER OS05G0588300 PROTEIN 74 688 - -
Vifa2g01399 700 CDD STKc_IRAK 411 676 - -
Vifa2g01399 700 Pfam Protein kinase domain 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01399 700 ProSiteProfiles Protein kinase domain profile. 405 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01399 700 MobiDBLite consensus disorder prediction 349 380 - -
Vifa2g01399 700 FunFam Leucine-rich repeat receptor-like protein kinase 90 200 - -
Vifa2g01399 700 FunFam Leucine-rich repeat receptor-like protein kinase 201 289 - -
Vifa2g01399 700 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Vifa2g01399 700 Gene3D Ribonuclease Inhibitor 202 290 IPR032675 -
Vifa2g01399 700 Gene3D Ribonuclease Inhibitor 89 201 IPR032675 -
Vifa2g01399 700 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515
Vifa2g01399 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 688 - -
Vifa2g01399 700 SUPERFAMILY L domain-like 89 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01399 Vifa-Chr2 380935133 380938565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01399 53 698 Receptor kinase-like Gene Family AT5G58300 66.003 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g01399 Pkinase 1.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01399 - - gmx:100796171 1032.71