Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01398 ATGAATCCTCAACAAGAATCGGATTTTGATTCTGGTGCTCTCAAACCTTATTACGGAAAGCTGTTTCCTTTTGCTGATATGTTTAAATGGATGTCTTATGGCCATGACGGTAAACATCCTGGCTGTGATCAGTCATACTTTGGAAGAAGGGAATTTTCCTTCACTTTGAAAGGGGATTTTTATCTGCGCTTCCAATCATACAACAATGTCCTTGAACTCGAAAACTCCATCAAAGATAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATCCTGCAAAAAGACATGCCTATGCACAGAGTGATAATAGTGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATATTAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCGTAGCCATCAAAGTGATTGATACTTCCTTAAGAGATGAGTTTGGTTTTAAGCATATACTCTGGGTCTATAGTGGACGTAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACAAATGAGCAAAGATCTGCTATTGCCGAATATTATCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACTGGTGGTGCTCTTCATCCTTTCTTGGCGACATCATACACCAATGTCCTCAAGGACTATTTTGAGAAAAAACTGCTTACAAATCAAAACTTACTTGCTACCGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAATAGACGGTCCACTAGTGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGTTGCTGCAATCTGGAAAACATAAGGCACAGGGTCTGCGAAGATGTGTTGAAGAAATTGTGTTCTCCTATACTTACCCCAGGCTAGATATGGAGGTTTCAAAGCATATGAATCATTTGCTTAAAGCACCGTTTTGTGTTCATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCGGTGTGATGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTCTAGAGGAGCTTAACAATGAAGGCTTGAGAGCTGATGTTAATGGCGCAGAATGGAGTGGAACTTCACTTGGAAATGCTGTTAGGCTTTTCAGATCTTCATTCTTGGAACCTTTGCAGAAAGCCTGCAAGGAGGAGATAGAAAGATCCTATAATTTGAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAG 1305 0.4092 MNPQQESDFDSGALKPYYGKLFPFADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSYNNVLELENSIKDKCPLKIDIGPVYTVDPAKRHAYAQSDNSVFTPVERELIFDIDMTDYDDIRYCCKGADVCLDCWPLMTVAIKVIDTSLRDEFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRSAIAEYYRVYKGNENSHKKVSLTGGALHPFLATSYTNVLKDYFEKKLLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNRRSTSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGAEWSGTSLGNAVRLFRSSFLEPLQKACKEEIERSYNLKLQQSKNSIGW 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01398 434 PANTHER DNA PRIMASE SMALL SUBUNIT 6 419 - -
Vifa2g01398 434 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 370 IPR014052 GO:0003896|GO:0006269
Vifa2g01398 434 SUPERFAMILY Prim-pol domain 13 377 - -
Vifa2g01398 434 Gene3D DNA primase, PRIM domain 2 415 - -
Vifa2g01398 434 FunFam DNA primase 1 415 - -
Vifa2g01398 434 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Vifa2g01398 434 CDD AE_Prim_S 23 362 IPR014052 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01398 Vifa-Chr2 380917761 380923329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01398 3 434 Core DNA Replication Machinery Family AT5G41880 65.972 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01398 K02684 - gmx:100780574 775.393