Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01397 ATGAATCCTCAACAAGAATCGGATTTTGATTCTGGTGCTCTCAAACCTTATTACGGAAAGCTGTTTCCTTTTGCTGATATGTTTAAATGGATGTCTTATGGCCATGACGGTAAACATCCTGGCTGTGATCAGTCATACTTTGGAAGAAGGGAATTTTCCTTCACTTTGAAAGGGGATTTTTATCTGCGCTTCCAATCATACAACAATGTCCTTGAACTCGAAAACTCCATCAAAGATAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATCCTGCAAAAAGACATGCCTATGCACAGAGTGATAATAGTGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATATTAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCGTAGCCATCAAAGTGATTGATACTTCCTTAAGAGATGAGTTTGGTTTTAAGCATATACTCTGGGTCTATAGTGGACGTAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACAAATGAGCAAAGATCTGCTATTGCCGAATATTATCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACTGGTGGTGCTCTTCATCCTTTCTTGGCGACATCATACACCAATGTCCTCAAGGACTATTTTGAGAAAAAACTGCTTACAAATCAAAACTTACTTGCTACCGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAATAGACGGTCCACTAGTGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGTTGCTGCAATCTGGAAAACATAAGGCACAGGGTCTGCGAAGATGTGTTGAAGAAATTGTGTTCTCCTATACTTACCCCAGGCTAGATATGGAGGTTTCAAAGCATATGAATCATTTGCTTAAAGCACCGTTTTGTGTTCATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCGGTGTGATGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTCTAGAGGAGCTTAACAATGAAGGCTTGAGAGCTGATGTTAATGGCGAATGGAGTGGAACTTCACTTGGAAATGCTGTTAGGCTTTTCAGATCTTCATTCTTGGAACCTTTGCAGAAAGCCTGCAAGGAGGAGATAGAAAGATCCTATAATTTGAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAG 1302 0.4086 MNPQQESDFDSGALKPYYGKLFPFADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSYNNVLELENSIKDKCPLKIDIGPVYTVDPAKRHAYAQSDNSVFTPVERELIFDIDMTDYDDIRYCCKGADVCLDCWPLMTVAIKVIDTSLRDEFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRSAIAEYYRVYKGNENSHKKVSLTGGALHPFLATSYTNVLKDYFEKKLLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNRRSTSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGEWSGTSLGNAVRLFRSSFLEPLQKACKEEIERSYNLKLQQSKNSIGW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01397 433 Gene3D DNA primase, PRIM domain 2 414 - -
Vifa2g01397 433 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 370 IPR014052 GO:0003896|GO:0006269
Vifa2g01397 433 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Vifa2g01397 433 CDD AE_Prim_S 23 362 IPR014052 GO:0003896|GO:0006269
Vifa2g01397 433 PANTHER DNA PRIMASE SMALL SUBUNIT 6 418 - -
Vifa2g01397 433 FunFam DNA primase 1 414 - -
Vifa2g01397 433 SUPERFAMILY Prim-pol domain 13 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01397 Vifa-Chr2 380917761 380923329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01397 3 433 Core DNA Replication Machinery Family AT5G41880 66.435 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01397 K02684 - gmx:100780574 780.015