Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01394 ATGACCGTACACTCAACCATGAAGCTTCAGAAACCCAAGCTAAAAGCTTCAAGATCAAATTTTGAAACTAACCCATTATTCAAAACCACCACCACCATAACCCAAAACAACATGAAGCTACTCAAGGTCATTCTCACTGACCATGATGCAACCGATTCTGACTCTTCCGGCGAAGATGAACCCTCGCCACCACAAAAGCTTCGAGGGAAGAGAGAAATAACCGAAATCACCATGCACATGAACTTTCCTCTTGTATCTGAATCTCCTAAAACCTCACCTTCTTCTTCAGCTTGCTCCACTGACCCGACCCGTTTCAAAAGACGTGGAAAAGTAGTCAAAAAATCTGGTAGTGCTCGCCGGGAAAACATGTTCCGTGGCGTTCGTCAGAGACCGTGGGGTCGTTGGACTGCCGAGATCCGTGACCCGAACCAACGAAAACGCGTCTGGTTAGGAACTTTCGACACGGCGGAGGAAGCCGTCGCTGTGTACGACGAAGCCGCCGTGAAGCTTAAGGGTCCAAAGGCAATTACCAACTTTCCCGGTAAAATTCCCAACAACGACGCCGGTAATAAAGATGACAACGAGCAATCCAAATTTTTCTCCGGCGACGGTTTTGCTTCTCCGACCTCCGTTCTGCCTTACTACGACGGTGACTCGACGCCTTTTGACAGTTTTCGTTACGGAACAGTGGATGCGTTTGGCTTCGATATTGACACGCCGTTAAGTTTAACGGATGTTAACTTTATCGGGTTTGGGAAAGAAAAAGAAGAGTTCGGTGAGTTTGACTTGGACGAGTTCATGACGTGGCCCAGTTAA 816 0.4779 MTVHSTMKLQKPKLKASRSNFETNPLFKTTTTITQNNMKLLKVILTDHDATDSDSSGEDEPSPPQKLRGKREITEITMHMNFPLVSESPKTSPSSSACSTDPTRFKRRGKVVKKSGSARRENMFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAVAVYDEAAVKLKGPKAITNFPGKIPNNDAGNKDDNEQSKFFSGDGFASPTSVLPYYDGDSTPFDSFRYGTVDAFGFDIDTPLSLTDVNFIGFGKEKEEFGEFDLDEFMTWPS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01394 271 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 MobiDBLite consensus disorder prediction 84 102 - -
Vifa2g01394 271 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Vifa2g01394 271 MobiDBLite consensus disorder prediction 49 68 - -
Vifa2g01394 271 Pfam AP2 domain 124 172 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 Gene3D AP2/ERF domain 123 181 IPR036955 GO:0003700|GO:0006355
Vifa2g01394 271 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Vifa2g01394 271 MobiDBLite consensus disorder prediction 84 118 - -
Vifa2g01394 271 PIRSF PTI6 7 271 IPR017392 GO:0003700
Vifa2g01394 271 CDD AP2 124 180 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Vifa2g01394 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01394 Vifa-Chr2 379819739 379820554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01394 32 214 AP2-EREBP Transcription Factor Family AT4G27950 43.434 1.48e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g01394 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01394 K13434 - gmx:100794593 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01394 2 379819739 379820554 Vifa2g01394 2 379819739 379820554 ECH