Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01393 ATGGATTCATCAAAAGCTTTAGGGTTTCATCATGGATTCATCAAAAGCTTGAAGAGAATTAGGGTTTTTGCACCCTCCATTGAGAAATTAGGAATTAGGATTTTAAAGAAAAGGGTTTTCGTTTTCGTTCCAATAGCAGCAGACGCGGTGGTAGATAACAGCAAACACCAGATTTCGCTCTCGCTCTCTCCTTCCACCGGTGAACTCGTTTCAGTTACCACCATGGCAGAAGAAGCACAAATTGATGTGAAGGAGGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTTGTAGATCTTGATGATGATTCTGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGTTTCTGAGGGGTTTGATAGTACATTAGCTGGTGCGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGTAACTTAATTGAAGAAAGTATTGATGCGAAAAATGATGATTTGGATGATCACGCTGAAGAAGATGACCAAGAGGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGGAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGAGTGTTTAACATTCTACGCGAGAATAATCCAGAACTTGCTGGAGACCGGCGAAGGACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAACTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGATCATGTAATGGCTTTCTTGCTTGCGGAATTGGGTACAAGTGGTTCTCTAGATGGGCAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAATTTTGAAGGAATTTTGCGTCGATACGTCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCCGACACAATACTTTCTAAGGAAAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCGGGAAGATCAGTTGCACCGATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGAACTGCAGGGGGGACATGA 1035 0.4338 MDSSKALGFHHGFIKSLKRIRVFAPSIEKLGIRILKKRVFVFVPIAADAVVDNSKHQISLSLSPSTGELVSVTTMAEEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGAKKKKKKPVEISNLIEESIDAKNDDLDDHAEEDDQEAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01393 344 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 292 327 IPR016190 GO:0003743|GO:0006413
Vifa2g01393 344 Gene3D - 186 328 - -
Vifa2g01393 344 MobiDBLite consensus disorder prediction 156 181 - -
Vifa2g01393 344 Pfam Domain found in IF2B/IF5 213 321 IPR002735 GO:0003743|GO:0006413
Vifa2g01393 344 FunFam Eukaryotic translation initiation factor 2 subunit 186 328 - -
Vifa2g01393 344 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 188 295 IPR016189 GO:0003743|GO:0006413
Vifa2g01393 344 SMART eIF2Bneu4 213 322 IPR002735 GO:0003743|GO:0006413
Vifa2g01393 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 192 341 IPR045196 GO:0003743|GO:0006413
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01393 75 339 Eukaryotic Initiation Factors Gene Family AT5G20920 73.507 7.40e-131 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01393 K03238 - gmx:100783618 433.335