Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01390 ATGGAGCAGCGAAAGCTTGTGGTTATGGGTATCCCATGGGACGTTGATACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTTATATTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTACACCAGTGGATGATGCTAAGAACGTGCTATCTAGTGAACACAATCTTGGCAACATGATACTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGTCAAAAAGGTTACCAGAATCTTTGTGGCAAGGATTGCCCAATCAGTAACAGAAGCAACTTTTAGGAGTCATTTTGAGAAATATGGTAATATAACAGATTTGTATATGCCAAAGGATCGAGGATCTAAAACTCATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAACTTGATGAAAGAAACCCATGAACTCGGAGGTTCTGCTGTGGTGGTTGATCGAGCAACACCTAAGGCAAGATTGTTTAGAGCTTATTCATTTTTCATTGCATTTTCCATTGAAGCAATTATCTGTTTGTAG 573 0.4101 MEQRKLVVMGIPWDVDTEGLKEYMSKFGELEDCYIIKERSTGRSRGFGYVTFTPVDDAKNVLSSEHNLGNMILEVKVATPKEEMRAPVKKVTRIFVARIAQSVTEATFRSHFEKYGNITDLYMPKDRGSKTHRGIGFITFASADSVENLMKETHELGGSAVVVDRATPKARLFRAYSFFIAFSIEAIICL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01390 190 Gene3D - 85 172 IPR012677 -
Vifa2g01390 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 82 IPR000504 GO:0003723
Vifa2g01390 190 Gene3D - 1 84 IPR012677 -
Vifa2g01390 190 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vifa2g01390 190 SUPERFAMILY RNA-binding domain, RBD 89 173 IPR035979 GO:0003676
Vifa2g01390 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vifa2g01390 190 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vifa2g01390 190 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vifa2g01390 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Vifa2g01390 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Vifa2g01390 190 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vifa2g01390 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 82 - -
Vifa2g01390 190 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01390 Vifa-Chr2 379697306 379699039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01390 6 169 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 1.92e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01390 K14411 - gmx:100795240 306.99