Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01388 ATGTCGTATGTTCCTCCACACTTGAGAAACGCGAGCTCAACCACGGTGGCCACCACCACCACCACCACCAGACCTTTATCATCAACCGGAACCCTAGACAACCACCATCACCACCACAACACCAACCTCGCATTCTCTTCCTCATACTCTCACTCTCACCCCAACTATTCTTCTCTCTCCAATGGCACTCGCCGCACCTCCGCCGCACCTCCGCCATCTCGGATTATCACCGTCCCTGATACTGTCTTCCCTAACTGGCAACCTTCTGAACGCGTTTCCCGCATGAACCCCGACCAGATTGAAGAGGTCCGCATACGGCTTAATCTTGATGTTACTGTTTCGTCTGACTCTCCTGCTGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGCATCCACGTATCATGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCCATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACCGCAGCTTTCACCATTCCTATGATACAGCATTGCTTGGTCCAACCTCCAATTCGGCGTGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCATTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTTGGTGGAACTAACATTGAGAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGGTTTGAACCACAAATAAGGGAGATCATGAGAAGTCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCAACAATGCCCGTGGAGATCGAAGCATTAGCAAAGGAGTACTTGGCTAACCCAGTTCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACTAATGTTTCACAAACTCTTGTAAAGGTTTCTGAAAGTGAGAAGATTGACCGACTCCTAGATTTGCTTGTAGAAGAGGCATCACAAGCTGAAAAGTGTGGTCATCCATTTCCATTGACTATTGTGTTTGTTGAGAGAAAGACAAGGTGCGATGAAGTGGCTGAAGCATTGGTTGCTCAAGGATTATCTGCAGTTTCTCTGCATGGTGGTCGCAGTCAGAATGAAAGAGAGGCTGCATTACAAAATTTTCGGAGCAGCTCCACCAGCATTTTGGTTGCCACTGACGTTGCATCACGGGGCTTGGATGTCACAGGAGTGTCACACGTCATCAATCTTGACCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACCGGGCGTGCAGGATCAACTGGCATAGCCACTTCATTTTACACTGACCGTGATATGTTTCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAATGGTGTGGCATTTGCTACCGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAAGCAAATATTGCTTTATCTAGACACCTTGGATTGGGAGCTGCATCAATTAACATCGAAGATAAGTACAGATTCATGATTGCTGCCTCAAACAGTAGAGGAGAAGGTGCAGCAGATAGTGCATGGGACGATTGA 1713 0.4653 MSYVPPHLRNASSTTVATTTTTTRPLSSTGTLDNHHHHHNTNLAFSSSYSHSHPNYSSLSNGTRRTSAAPPPSRIITVPDTVFPNWQPSERVSRMNPDQIEEVRIRLNLDVTVSSDSPAAPGPIESFNDMCLHPRIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALQNFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNGVAFATGKVARRKEKEAAAAHKEANIALSRHLGLGAASINIEDKYRFMIAASNSRGEGAADSAWDD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01388 570 FunFam probable ATP-dependent RNA helicase DDX17 85 335 - -
Vifa2g01388 570 MobiDBLite consensus disorder prediction 1 81 - -
Vifa2g01388 570 Pfam Helicase conserved C-terminal domain 356 473 IPR001650 -
Vifa2g01388 570 Gene3D - 85 336 IPR027417 -
Vifa2g01388 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Vifa2g01388 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 493 IPR027417 -
Vifa2g01388 570 Coils Coil 211 231 - -
Vifa2g01388 570 SMART helicmild6 392 473 IPR001650 -
Vifa2g01388 570 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Vifa2g01388 570 SMART ultradead3 144 347 IPR014001 -
Vifa2g01388 570 CDD DEADc 136 333 - -
Vifa2g01388 570 Gene3D - 338 530 IPR027417 -
Vifa2g01388 570 CDD SF2_C_DEAD 344 482 - -
Vifa2g01388 570 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 109 519 - -
Vifa2g01388 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 514 IPR001650 -
Vifa2g01388 570 MobiDBLite consensus disorder prediction 41 70 - -
Vifa2g01388 570 Pfam DEAD/DEAH box helicase 149 319 IPR011545 GO:0003676|GO:0005524
Vifa2g01388 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vifa2g01388 570 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01388 Vifa-Chr2 379020019 379032511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01388 125 495 Eukaryotic Initiation Factors Gene Family AT1G72730 36.000 1.21e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01388 K12823 - gmx:100818387 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01388 2 379020019 379032511 Vifa2g01388 2 379020019 379032511 ECH