Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01385 ATGTGTATTTCAAAGGGTTGTTACAAGCATGAAGTTGTTTTCATCATCTTATGGTTCTGCTGCTGTTTCGCACCGGCTGCTGCGCAACTTATCAATGTCACTGACCCTACTGAAGTGCTAGCATTGAGGAGCATACATGAAAGTTTGATTGATCGGAATGGACATTTGAGCAATTGGAAGGATGATGATCCATGCCTATCTAACTGGACAGGAGTTGTATGCTCTAATGAAACAATAGAGGAAAACTTTCTACATGTTGTAGAATTGGAACTAATGAGATTGAACTTATCTGGAAGTTTGGCACCAGATATTGGCAACTTGGCTTATTTGAAAATATTGAATTTCATGTGGAACAACATAAATGGGACAATTCCAGTTGAGATTGGCAATATCAAATCTTTGGAACTCTTGTTCCTAAGTGGAAATGAATTAACAGGACCAGTGCCAGAGCAACTTGGGTTTCTTCCAAATCTACGTATTATGCAAATTGATGAAAACAAATTATCAGGACCTATACCTTTATCATTTACAAATTTGAACAAAACAAAACACTTTCACATGAACAATAACTCACTTAGTGGCCAAATCCCACCAGAACTTTCAAAATTACAAAGCCTTATTCATCTGCTTTTGGACAATAATAACTTATCAGGAATTCTTCCACCAGAGCTATCTGATACGCCAAACTTGAGTATACTACAACTTGACAACAATAACTTTGGAGGAAATAGCATTCCAGATTCTTACGCCAACATGTCAAAATTGGTCAAATTGAGCCTTAGGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCTTGATACCAAACCTTCTTTATGTTGACCTTAGCTCCAATCAGTTGAATGAATCAATTCCTCGTAATAAGCTTGCTGAAAATATCACAACTGTTATTTTATCAAACAACAATCTTACTGGAACTATTCCATCCTATTTTTCTGATCTTCCACGCCTCCAGAAATTGTCTCTTGCAAACAATATATTGAGTGGAAGTGTTCCCTCTAGCATTTGGCGGAACAAGATTTCAAATGCTAATATAAAATTGCTACTAGAGTTGCAAAACAATCAATTTGTAAACATATCAGGCAGTACTAATCTTCCTCCAAATGCAACACTATTGCTTGATGGGAATCCCCTATGCTCAGATAACACACTGAATCAGTTCTGTAAACTTGAAGGACCTGGTAGTGAAACAAATGGCACATCTCCAAAAAACTCCAGTGACCCTTGTCCAAATCAAAGATGTCCACCTCCTTACGAATTCTATGTGAATTGTTTCTGTGTGGCTCCATTGATTATTGGTTATCGACTAAGAAGTCCTGGTTTTTCAGACTTTCCACCATATTTCAATGCATTTGAGGAATATTTGACTTCTAATCTTAAGCTACATGCCAATCAACTAAGCTATACTTTTGAATGGCAAGTAGGACCAAGGGTGCTAATGGTCTTGAAGCTTTTTCCTGAATATGTTGATAACAATAGTTCTCGCACTTTCAATTCAAGTGAAATCCAACGGATCAGAAACATGTTCACTGGATGGGTCATTCCTAACCGTGATTTGTTTGGGCCTTATGACCTGATGGACCTGGTTCCTTATAATAACGGGACTGAGACCTCTTCCGATTCAGGCATAAGCACGGGTGCATTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTAATTTCGTTGTCTGCAATTTTTATTCTTTTGATATTAAGAATAAGATTAAGACGACATGATGCAGTTTCCAAACCACGTCATTCATCTAAGGTCGCAATACAAATTGATGGCACAAGAGCTTTTACTTATGAGGAGTTGTCTGCTGCTACAAACAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTATTCTTTATAATGGCACTGTAGTTGCCATAAAACGTGCACAGGAAGGATCATTGCAAGGTGAGAAGGAGTTTCTCACAGAAATAAGAATACTATCAAGGATACATCACCGCAACCTTGTGTCTTTGATTGGATATTGTGATGAAGAAGGGGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACTCTAAGGGACCACCTTTCTGTTACAGCAGAAAAACCTTTGACTTTTGCTATGAGATTGAAGATAGCACTCGAGTCGGCTAAAGGTCTCATGTATCTACATACTGAAGCTGATCCTCCAATATTTCACCGAGATGTTAAGTCAAGCAACATATTATTAGATTCTAAGTTCACTGCAAAAGTTGCTGATTTTGGACTTTCACGGCTAGCCCCAGTTTCAGATGTTCAAGGCGTTGTACCTGGCCATGTATCCACGGTGGTAAAGGGCACACCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACACATTGACTGACAAGAGTGATGTTTACAGCCTTGGCGTTGTGTTTCTAGAACTTTTGACTGGAATGCACCCCATCGCACATGGGAAAAATATTGTCAGAGAGGTTAGTGTTGCTTATGAATCGAGTGAGATATCTTCAGTTATTGATAAAAGCATGGGGTCTTATCCATTTGAGCATGCAGAAAAGTTTTTAAATTTGGCTTTGAAGTGTTCTGAAGATGAGCCAGAGCCACGTCCTAAAATGGCAGAAGTGGTTAGAATACTTGAAAACATGTCTTCTGTGATGACAGATTCAGATACAACTAGAGATACATCTACAACCAGTGATTCGCGCAAAACAGTCAGCTTTCTAGGCACACCTTCTTCGTCCTCAACCATAAATACTCCCTTTGTATTAAGAACTGTATAA 2811 0.3867 MCISKGCYKHEVVFIILWFCCCFAPAAAQLINVTDPTEVLALRSIHESLIDRNGHLSNWKDDDPCLSNWTGVVCSNETIEENFLHVVELELMRLNLSGSLAPDIGNLAYLKILNFMWNNINGTIPVEIGNIKSLELLFLSGNELTGPVPEQLGFLPNLRIMQIDENKLSGPIPLSFTNLNKTKHFHMNNNSLSGQIPPELSKLQSLIHLLLDNNNLSGILPPELSDTPNLSILQLDNNNFGGNSIPDSYANMSKLVKLSLRNCNLRGPIPDLSLIPNLLYVDLSSNQLNESIPRNKLAENITTVILSNNNLTGTIPSYFSDLPRLQKLSLANNILSGSVPSSIWRNKISNANIKLLLELQNNQFVNISGSTNLPPNATLLLDGNPLCSDNTLNQFCKLEGPGSETNGTSPKNSSDPCPNQRCPPPYEFYVNCFCVAPLIIGYRLRSPGFSDFPPYFNAFEEYLTSNLKLHANQLSYTFEWQVGPRVLMVLKLFPEYVDNNSSRTFNSSEIQRIRNMFTGWVIPNRDLFGPYDLMDLVPYNNGTETSSDSGISTGALVGIILGSIACVISLSAIFILLILRIRLRRHDAVSKPRHSSKVAIQIDGTRAFTYEELSAATNNFDNNAQIGQGGYGKVYKGILYNGTVVAIKRAQEGSLQGEKEFLTEIRILSRIHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAEKPLTFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVSDVQGVVPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPIAHGKNIVREVSVAYESSEISSVIDKSMGSYPFEHAEKFLNLALKCSEDEPEPRPKMAEVVRILENMSSVMTDSDTTRDTSTTSDSRKTVSFLGTPSSSSTINTPFVLRTV 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01385 936 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 36 197 - -
Vifa2g01385 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Vifa2g01385 936 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vifa2g01385 936 Gene3D Phosphorylase Kinase; domain 1 590 695 - -
Vifa2g01385 936 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Vifa2g01385 936 MobiDBLite consensus disorder prediction 894 924 - -
Vifa2g01385 936 CDD STKc_IRAK 626 892 - -
Vifa2g01385 936 SUPERFAMILY L domain-like 49 398 - -
Vifa2g01385 936 MobiDBLite consensus disorder prediction 398 417 - -
Vifa2g01385 936 PANTHER RECEPTOR-LIKE PROTEIN 55 45 893 - -
Vifa2g01385 936 Gene3D Ribonuclease Inhibitor 299 385 IPR032675 -
Vifa2g01385 936 ProSiteProfiles Protein kinase domain profile. 620 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01385 936 Gene3D Ribonuclease Inhibitor 190 298 IPR032675 -
Vifa2g01385 936 MobiDBLite consensus disorder prediction 398 416 - -
Vifa2g01385 936 SUPERFAMILY Protein kinase-like (PK-like) 595 890 IPR011009 -
Vifa2g01385 936 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 906 - -
Vifa2g01385 936 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Vifa2g01385 936 Gene3D Ribonuclease Inhibitor 36 189 IPR032675 -
Vifa2g01385 936 SMART serkin_6 620 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01385 936 Gene3D Transferase(Phosphotransferase) domain 1 696 915 - -
Vifa2g01385 936 Pfam Protein kinase domain 622 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01385 Vifa-Chr2 378192670 378199334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01385 1 901 Receptor kinase-like Gene Family AT5G01950 54.376 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa2g01385 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01385 - - gmx:100786467 1286.17