Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01381 ATGGGTTCTGACATTGGTATCGTCAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGCCTTTACGATCTGGTGGATTCACTCAACTCTGCATCAAGTGCGGATTTGTGGAGGAATGGAAGTGTGACATCATTGAATCATTATCTGCTTATGAGAATTCGGTTTTCTGTAATAAATTCCACCGTCATCAAACTGGTTGGCGAGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGCGTAAATACTTCCCAACTTAATATGATGAGGAATACTGAAAATCCTAACTGGCCCGTTTCGATGACCCAAAGTAACGCAAGGGATATGCATTCTGCTCATTTTGATGGCAGAATGTTAATGAGCAATGTTGATGAAGGAAAACTCATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCCGTCCATATGAATCACGCTCCGAGAGAAAGTGCGATTACATGTAACGGAAAAAACAATCAAGAAGTTAAGCCTTCATTCAAGGAAGGGGATACTGGATTTTCGAATGTGATTAAACCATCTGCTCAGTCATTAACTTTTTCAACGTTTGAAAGTAATAGACCGACATGGGAGATTAAAAACATGCATGAATCAAACGTGAAGCCATCTTTGAATATGTGTTTGGGAAACCCTTCTGGGAGCAACTCTTTCCCACCTTCGGTTGGAGAGAATATAGAAGGAAGACTCGAGGGGAAAGTATCTCCTCCCTTTCATCAAGGGCCAAGAACTCGCCCTATATTGCCGAAACCATTGAAGACTGGCCTTACCATGAAAGTAGAAACTGAGAAAGGGATGGTTAATCAACCACGGATTGCCCGGCCTCCTGCTGATGGGAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCAAGGATTACGGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCTTTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTAGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACATTCTGAAGGCCTTCCTTTGCGGGTCCAAGATGTGAAAGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTCACCCCTTGCATACAGGCCATGGATTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGGAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCCTAGATACACCGGACGTTCCTAATTGCATTTTGCCAAAGGGAGCCACCTTTTCTGGTGGAACTGAGAATCTTCCATTGGGAAGCAATTGTGCCGATCTTCTCCATTCAACAAAAGGGAATGGGGAACTTCACTTAAATGGACATCCAAGACCTCCTCATTTGAGTACCGGAGCTGCTGGTTTGCTTAAAACTGAAAATGGCGAGATGACAAACAATAATTCGCTCGACCAAAAAATTTCAATTTTAGAAAAGAAGAGGGCTCGAAATATTGGTCTTAAAAGTAAAAGATTACTCATTGGCAATGAAGACGCGATGGAGTTGAGACTTACTTGGGAAGAAGCACAGGACTTGCTTCGTCCACCGCCTCGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATACGATGAACCCCCGGTTTTCGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCGAAATGGAGAAAGTTACCGGTGGATGCTCTTCTTCCTCCAAAGTGGACATGTTCTGAAAATGTTTGGGATACAACCAGATCTTCATGTTCTGCGCTAGAAGAGCTGAGTGCAAGAGAATTAGAAAATCTTCTGAAATCCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCATCTGGCTTAGACGCACTCGCAAGTTTAGCAGTTTTAGGAGAAAATTTCATCGACCCTACCGATTCCTCAGCAGGAGCCACCACTAAACATCCTAGACACCGACCTGGCTGCTCTTGTATTGTGTGCATTCAGCCCCCAAGCGGGAAAGGGAGACACAAGCCAACTTGTACTTGCAATGTATGCATGACCGTGAAGCGTCGGTTCAAAACCCTTATGCTACGCAAGAAAAAACGCCAATCGGATCGCGAAGCAGATGCGGATGCCAAGAAAGACCATACACGCAAGCCTGATACCGATGGAGCATCAAGAGATAACGCAAATCCTTTGGATAAAGAGGAAGGAATAAATAAAGGTCAAGCCGAAGTTGGTGAGTCCAGTACTGGACAGATAGATCTAAATTGCGATCCCAATCGCGACGACTCACAAGTGGATAATAATAATATCGCAAAACTTAGTCGTCGACTATGGGAAGATATGAACATGAACATGAACCAACATGGTGGTGTAAGAACCATTAACACTGAAGTGCAGGAAGATCAGCATTCTTCTTTGGTCACTAAATCAAATGGTGAAGATAAGAGATACTTATCTGAAGAAAGATGCATTACATCCATTGTCAGGAACAAAGAAAAAAGAGATGAGGTATACAGTCATCATTCCAATGAAAGTCAAAACAATCTGTCTTAA 2721 0.4326 MGSDIGIVNGSCVHEWKKGWPLRSGGFTQLCIKCGFVEEWKCDIIESLSAYENSVFCNKFHRHQTGWRECNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTSQLNMMRNTENPNWPVSMTQSNARDMHSAHFDGRMLMSNVDEGKLMQLCRVVEASESVHMNHAPRESAITCNGKNNQEVKPSFKEGDTGFSNVIKPSAQSLTFSTFESNRPTWEIKNMHESNVKPSLNMCLGNPSGSNSFPPSVGENIEGRLEGKVSPPFHQGPRTRPILPKPLKTGLTMKVETEKGMVNQPRIARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSLDTPDVPNCILPKGATFSGGTENLPLGSNCADLLHSTKGNGELHLNGHPRPPHLSTGAAGLLKTENGEMTNNNSLDQKISILEKKRARNIGLKSKRLLIGNEDAMELRLTWEEAQDLLRPPPRVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGVKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTTRSSCSALEELSARELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENFIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSDREADADAKKDHTRKPDTDGASRDNANPLDKEEGINKGQAEVGESSTGQIDLNCDPNRDDSQVDNNNIAKLSRRLWEDMNMNMNQHGGVRTINTEVQEDQHSSLVTKSNGEDKRYLSEERCITSIVRNKEKRDEVYSHHSNESQNNLS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01381 906 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Vifa2g01381 906 MobiDBLite consensus disorder prediction 798 822 - -
Vifa2g01381 906 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Vifa2g01381 906 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Vifa2g01381 906 Pfam CW-type Zinc Finger 603 645 IPR011124 GO:0008270
Vifa2g01381 906 ProSiteProfiles Zinc finger CW-type profile. 598 648 IPR011124 GO:0008270
Vifa2g01381 906 Gene3D - 317 444 IPR015300 -
Vifa2g01381 906 SMART B3_2 339 439 IPR003340 GO:0003677
Vifa2g01381 906 MobiDBLite consensus disorder prediction 885 906 - -
Vifa2g01381 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 855 - -
Vifa2g01381 906 MobiDBLite consensus disorder prediction 750 822 - -
Vifa2g01381 906 Gene3D - 601 656 - -
Vifa2g01381 906 CDD B3_DNA 337 438 IPR003340 GO:0003677
Vifa2g01381 906 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Vifa2g01381 906 MobiDBLite consensus disorder prediction 754 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01381 Vifa-Chr2 377232087 377237199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01381 1 821 B3 DNA Binding Superfamily AT2G30470 48.263 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g01381 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01381 K09287 - gmx:100789848 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01381 2 377232087 377237199 Vifa2g01381 2 377232087 377237199 ECH