Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01370 ATGTCAACACATCTGCAAGATCCACCTTCAGACTCAAACTACAATCCCAATGCCACGTCATCAACACCCTCTCCTAACCCCTTCATCCGCGGCAGCATCAACGGTGTCGCCACCGCTCCATACGGCGGCGAATCCCACTCCCACTCCCACCACCGGAGATCGCACTCCGAGATCAACTACCGTCTCCCCGACGAAATGATGGACCTATCTCCATCCAATCCGTTGAACGGAGGAGGGTCCTCGACGGCCAGCCTGGAGGAGATCGGATCGGAAGACGATCTGTTCTTCACCTACATTGACGTGGAGAAGCTCGGAGGATGTAGTAACGGTTCGAATAGGGGAGGAAATGGATCGGAGCAGAGCGGTTACGGTAACGGAGCGGGGACGAGCGGACAGAATGATGGAGATAAGAGTCTGAATGAGGCTACTACGCCGAGAACGAGGCATAGACATAGTTGCTCTGTTGATGGTACTACGTCGTCCACGAGTATGCTTGGAGAGATCATGGATGCCAAGAAAGCTATGCCTCCGGATAAACTCGCTGAGCTTTGGACTCATGATCCCAAGCGTGCCAAGAGGATACTTGCGAATAGACAGTCTGCTGCACGTTCAAAAGAGAGAAAGGCCCGTTATATACAAGAGCTTGAGCGCAAGGTTCAGACCCTTCAAACAGAGGCCACAACTCTCTCTGCTCAATTGACATTATATCAGAGGGACACAAGTGGTTTGAGTACTGAAAATACCGACCTTAAGCTCCGTCTGCAAGCCATGGAACAACAGGCACACCTTCGAGATGCACTTAACGATGCGTTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACCGGAGAGGCAATGAACCCCTCTGAATCTTATAATCTTGGAATGCACCCGATGCAATTCGCAGGGTCAAATTTCTTTTCAATGCCACAACAACATTCAGGTCCTTCTGGTCACCAGAACATACAATTTCCCCAATTCGGTCACTCTCCATCTAACATGCCATCCCATCAGCTGCAACAAACCAATTCTCACCAATTCTCAGAGATGTTGCAAAACGATCACCTCGGTCGTTTTAAGGGACTCGACATCAGTAACAAAGGATCATCCCTCGTGAAATCTGAAGGTCCCTCAATATCTGCAAGTGAGAGTAGCACTACATTTTGA 1167 0.4961 MSTHLQDPPSDSNYNPNATSSTPSPNPFIRGSINGVATAPYGGESHSHSHHRRSHSEINYRLPDEMMDLSPSNPLNGGGSSTASLEEIGSEDDLFFTYIDVEKLGGCSNGSNRGGNGSEQSGYGNGAGTSGQNDGDKSLNEATTPRTRHRHSCSVDGTTSSTSMLGEIMDAKKAMPPDKLAELWTHDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTSGLSTENTDLKLRLQAMEQQAHLRDALNDALMKEVERLKIATGEAMNPSESYNLGMHPMQFAGSNFFSMPQQHSGPSGHQNIQFPQFGHSPSNMPSHQLQQTNSHQFSEMLQNDHLGRFKGLDISNKGSSLVKSEGPSISASESSTTF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01370 388 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700|GO:0006355
Vifa2g01370 388 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
Vifa2g01370 388 MobiDBLite consensus disorder prediction 310 343 - -
Vifa2g01370 388 Coils Coil 205 232 - -
Vifa2g01370 388 MobiDBLite consensus disorder prediction 109 140 - -
Vifa2g01370 388 FunFam probable transcription factor PosF21 188 241 - -
Vifa2g01370 388 Gene3D - 189 239 - -
Vifa2g01370 388 MobiDBLite consensus disorder prediction 1 85 - -
Vifa2g01370 388 SUPERFAMILY Leucine zipper domain 189 240 IPR046347 GO:0003700|GO:0006355
Vifa2g01370 388 MobiDBLite consensus disorder prediction 1 31 - -
Vifa2g01370 388 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700|GO:0006355
Vifa2g01370 388 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 375 - -
Vifa2g01370 388 MobiDBLite consensus disorder prediction 369 388 - -
Vifa2g01370 388 Pfam bZIP transcription factor 189 247 IPR004827 GO:0003700|GO:0006355
Vifa2g01370 388 MobiDBLite consensus disorder prediction 107 162 - -
Vifa2g01370 388 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01370 Vifa-Chr2 374060016 374062290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01370 5 388 bZIP Transcription Factor Family AT2G40620 47.059 5.43e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g01370 bZIP_1 4.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01370 - - gmx:100775607 530.791