Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01369 ATGAAAACAATGGACAAAGACATATCAAACTGGGTCATGGAGTTTCTCCTTCGAAGCTCCGTACCCGATTCCCTCATCCAAAAAACCCTAACCGTTCTTCCACTTTCCGGCGCCGATTCTCGCCTCAAACAAACCCTCCTCCTCCGCATCCTCCAAACTCACCTCCACCACGCCTCCCTCTCCGAAACCTCCCTCCAAATCATCGAGCACCTCGAGGAGCTTTACCGCAGAGACGGGGTTCCTGTCCCCGCGGTAATGCGCAGTGCTTATTGCGCTGTTGCTGTTGAATGTACCGTGAAATACCTAATTACATCTCATGAGGATCCGTCCGGAGAATATATTTCCGCTATTCGACGGATCTGGCGTGGCCGGGTTGTTCAATTGTCGGCAGAGGGACGTCGGAGTGAGCTTTTATCGGACGAGTTGACGCGTTGGGGGGAAGACATTGAAGCGGCGCTTTGGGATGTTAGGGTTTCGGAGAGGCTTGCGAGTTTGAATACACGGAGAGACGCTATGAATGAAGTTAAGAGGTTTTTGAAGGATGCGTGGCAAGTTATGGGACCTTCGTTTCTTGATTCGATGGCAATGGGTTCGAAAGGGAATGGTTTGGGTCCTGAAGGTGTTTGTGGAAATGCTTCGGGTAGTGAAAAGATGAGAAAGAGTGATGCAAGGTTAGAGAGTTTGGGAAAGGAGAAAATGTGCTCTGTTGGAGATGATAACAATGATAATGATAATGTTGATGATGATGGTGGTGATGATGATGACGACGTGGAAGTGATGGGTGAAGACCATGGCAATGAAGGATTTGAAGAGAGAGTTGGTACTTCTGTTGATGCAAATCAGGAAGTGGGTGGGTGTGATTCTTCAAATGTAGATAAAGAAATCTGGGAAGACAATGTTCGGCTCAAACACAAGCACTCTGCACTACGAACATGCCATAGGGGAGTTAAAATCTCTGGTACTGAGGAAGTGAGGCCAACAAATTTATCGAGTAAATATAAAATCTTGCCTAGTCCTGAAGTAAATAAAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAGGCATTGGTCAAGGATCCTCTTCCCGATGCATTGCGATCATCTGAAGATGTAAGATCCAAATTGGCAACAAAACATATAAATCCTGGGTCACCCTGTGAAAATCAGAATGGACATGTAGATGTGCGACATTCAGATGGATCGAAAACTATTGTACTCTATCAGCCTAATGATGCCAATCCTGCAAAGAAGTCTTCTGTTCCTTGTAGTAATGATCGTGGCCCCAACTTTATGGGACGGGCAAGTTCTGCTCATACTTACGAGTTGGATGATTCAATAGATAACTCACTGCAAGCAAGACAGCCAAGAAGGAAGAAAAGGAAATGGACTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGAGAACAATTAGAGACTTTTACAGCAACATATTCGAATATAGAAGTGGGGTTGATCTAAAAGACAAGTGGAGAAATATGATGCGGTGA 1539 0.4509 MKTMDKDISNWVMEFLLRSSVPDSLIQKTLTVLPLSGADSRLKQTLLLRILQTHLHHASLSETSLQIIEHLEELYRRDGVPVPAVMRSAYCAVAVECTVKYLITSHEDPSGEYISAIRRIWRGRVVQLSAEGRRSELLSDELTRWGEDIEAALWDVRVSERLASLNTRRDAMNEVKRFLKDAWQVMGPSFLDSMAMGSKGNGLGPEGVCGNASGSEKMRKSDARLESLGKEKMCSVGDDNNDNDNVDDDGGDDDDDVEVMGEDHGNEGFEERVGTSVDANQEVGGCDSSNVDKEIWEDNVRLKHKHSALRTCHRGVKISGTEEVRPTNLSSKYKILPSPEVNKVRESLKSSSMELKALVKDPLPDALRSSEDVRSKLATKHINPGSPCENQNGHVDVRHSDGSKTIVLYQPNDANPAKKSSVPCSNDRGPNFMGRASSAHTYELDDSIDNSLQARQPRRKKRKWTSLEEETLRAGVKMFGEGNWRTIRDFYSNIFEYRSGVDLKDKWRNMMR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01369 512 MobiDBLite consensus disorder prediction 241 259 - -
Vifa2g01369 512 SUPERFAMILY Homeodomain-like 457 511 IPR009057 -
Vifa2g01369 512 CDD SANT_TRF 462 512 - -
Vifa2g01369 512 PANTHER MYB TRANSCRIPTION FACTOR 4 512 - -
Vifa2g01369 512 Pfam Myb-like DNA-binding domain 461 510 IPR001005 -
Vifa2g01369 512 MobiDBLite consensus disorder prediction 231 259 - -
Vifa2g01369 512 ProSiteProfiles Myb-like domain profile. 456 511 IPR001005 -
Vifa2g01369 512 SMART sant 460 512 IPR001005 -
Vifa2g01369 512 Gene3D - 452 512 - -
Vifa2g01369 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 456 512 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01369 Vifa-Chr2 373856619 373858979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01369 464 511 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 9.23e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g01369 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01369 - - aprc:113849788 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01369 2 373856619 373858979 Vifa2g01369 2 373856619 373858979 ECH