Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01365 ATGACTAGAAAAAAGGTGAAACTTGCTTTCATTGAGAATAATACCGCAAGGAAATCTGCGTACAACAAAAGGAAAAAGAGTTTAGTGAAGAAGGTTGATGAACTAACAGCCCTTTGCGGTATCGATGCTTGCGCTATAATTTATGGCCCGTACGATGCTCAACCTGAGATCTGGCCATCTCCGTCCGGAGTCCAAGAGGTGCTTTCGAAATTCATGACTGTGCCTGAGGTTGAACAAAGCAGAAAGATGATGAATCAAGAGAGTTTTCTGAAACAAAGGATTTCGAAGAGTGAAAAGCAACTTCAAAAACAACGGAGAGACAACAGAGAGAAAGAGACAACCATGCACATGTTTCGGTGTCTCAATGCTGGAAACATTGTGCAGAACAGTATGTCGGTAGGTGATTTGAATGATCTTTCTTGGATGATTGATCATAATTTGAGGGCTATTGGAAGAAGGATGGAATCAGATGATAGGGAAAATATTATTCACCAATCACCACCACCACCGCCACCACCAACCGCGCCTAACAATAATGAAATTGCAATGATGGGTCATGGCCATGCTGGGATGGCTATGAATAATAATGACCTGATTCAAAGCCAGATGTTTATGGACATGGGGATGAATGGCTATGAATAA 642 0.4174 MTRKKVKLAFIENNTARKSAYNKRKKSLVKKVDELTALCGIDACAIIYGPYDAQPEIWPSPSGVQEVLSKFMTVPEVEQSRKMMNQESFLKQRISKSEKQLQKQRRDNREKETTMHMFRCLNAGNIVQNSMSVGDLNDLSWMIDHNLRAIGRRMESDDRENIIHQSPPPPPPPTAPNNNEIAMMGHGHAGMAMNNNDLIQSQMFMDMGMNGYE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01365 213 PANTHER MADS BOX PROTEIN 3 122 - -
Vifa2g01365 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vifa2g01365 213 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vifa2g01365 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01365 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01365 213 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01365 213 Coils Coil 87 114 - -
Vifa2g01365 213 MobiDBLite consensus disorder prediction 160 183 - -
Vifa2g01365 213 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vifa2g01365 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g01365 213 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vifa2g01365 213 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Vifa2g01365 213 MobiDBLite consensus disorder prediction 92 111 - -
Vifa2g01365 213 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01365 Vifa-Chr2 368842762 368843403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01365 1 155 Type I MADS-box Gene Family AT5G48670 56.774 7.41e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01365 SRF-TF 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01365 - - psat:127080453 276.944