Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01362 ATGAGTAGAAAGAAGGTGAAACTTCAATACATAATCAATCAATCCAGCCGTAGAGCAACCTACAACAAAAGGAAATCAAGTTTGCTGAAGAAGGTTAACGAAATCAGTATCCTTTGTGGAATAGAAGCATGTGTTGTAGTCTATGGTGAAAACAATGTTGAACCAGAGGTTTGGCCAACTGGTCCAGAAACACAAAACGTGTTACACAAGTTTCATAGTTTATCTGAACTCGAACGAAATAAAAGGGCGGAGGATTTGGAGGGTTACTTGAAGAAAAGCATAGAGAAATCCCAGGAGCAGTTGAGAAAACAAATTTTTGAGAACAAGAAGAAGAGATTTACTAATTTCATTGATAAAGCCCTTATTAATAAACATAACAATACTGATCTTGTGAACATCAATGAACTCAACGATATGAAGGATGAACTCAATGATCTGATGGAATTTATTGATAGCAATATAAATGAAGTCGAAAAAAAGTTGAATTCGACGAATGTTGAAGTTGGAGAGCATGTTGGTCACAGAATTGAAGCTATGATTGGAATTGAGCAGCAAGGTAATATTGGAAATGCAGTGAATGGAGGAGATATGAAGGATGATGTCCATGGTTTGGATATTCAAAATGATTATCAATATCTTCCTTGGGACAACCCCGTGTTATCATATCATGATTATAATATGGACACAAATGGTCTTTAA 699 0.3548 MSRKKVKLQYIINQSSRRATYNKRKSSLLKKVNEISILCGIEACVVVYGENNVEPEVWPTGPETQNVLHKFHSLSELERNKRAEDLEGYLKKSIEKSQEQLRKQIFENKKKRFTNFIDKALINKHNNTDLVNINELNDMKDELNDLMEFIDSNINEVEKKLNSTNVEVGEHVGHRIEAMIGIEQQGNIGNAVNGGDMKDDVHGLDIQNDYQYLPWDNPVLSYHDYNMDTNGL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01362 232 PANTHER MADS BOX PROTEIN 3 154 - -
Vifa2g01362 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g01362 232 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01362 232 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vifa2g01362 232 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vifa2g01362 232 Coils Coil 133 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01362 Vifa-Chr2 368048066 368048862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01362 1 173 Type I MADS-box Gene Family AT3G05860 37.288 1.21e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01362 SRF-TF 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01362 - - psat:127078340 334.724