Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01361 ATGTCGCTTTCTCCCCAGTTGGAGCTGAGAAACAAGGTGAAACTTCAATACATAATCAATCAATCCAGTCGGAGAGCAACCTACAACAAAAGAAAATCAAGTTTGCTGAAGAAGGTTAACAAAATCAGTATCCTTTGTGGAATAGAAGCATGTGTCGTAGTTTATGGTGAAAACAATGTTGAACCAGATGGCAGAGGATTTGGAGGGTTCCTTGAAGAAAAGAATAGAGAAATCCATGAGCAGTTGAGAAAACAAATTTTGGAGAACAAGAAGAAGAAATTTACCAATGTCATTGATAAAGCCCTAATTAATCTACATAACAATACTGATCTTGTGAACATCAATGAACTCAATGATATGAAGGATGAACTCAATGATCTGACGAAATTTATTGATAGCAATATCAATGAAGTCGAAAAAAAGTTGGAATCGATGAATCTTGAAGCCGAAGAGCATGTTGGTAATGGAATTGAAGCTATGATTTGA 486 0.356 MSLSPQLELRNKVKLQYIINQSSRRATYNKRKSSLLKKVNKISILCGIEACVVVYGENNVEPDGRGFGGFLEEKNREIHEQLRKQILENKKKKFTNVIDKALINLHNNTDLVNINELNDMKDELNDLTKFIDSNINEVEKKLESMNLEAEEHVGNGIEAMI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01361 161 CDD MADS_SRF_like 10 92 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01361 161 SUPERFAMILY SRF-like 10 60 IPR036879 GO:0003677|GO:0046983
Vifa2g01361 161 Coils Coil 135 155 - -
Vifa2g01361 161 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 134 - -
Vifa2g01361 161 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa2g01361 161 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa2g01361 161 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa2g01361 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01361 161 ProSiteProfiles MADS-box domain profile. 8 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01361 161 Gene3D - 20 152 IPR036879 GO:0003677|GO:0046983
Vifa2g01361 161 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01361 Vifa-Chr2 368024425 368027369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01361 10 63 Type I MADS-box Gene Family AT3G05860 53.704 1.09e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01361 SRF-TF 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01361 - - psat:127078340 198.364