Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01360 ATGACCAGAAAGAAGGTGAAACTTCAATACATAATCAATCAATCCAGTCGGAGAGCAACCTACAACAGAAGAAAATCAAGTTTACTGAAGAAGGTTAACGAAATCAGTATCCTTTGTGGAATAGAAGCATGTGTCGTAGTTTATGGTGAAAACAATGTTGAACCAGAGGTTTGGCCACCTGGTCCAAGAACACAAAACGTGATACAAAAGTTCTATGGTTTATCTAAACTCGAACGAAACAAAAGGGAAGAGGATTTGGAGGGTTACTTGAAGAAAAGAATAGAGAAATCCCATGAACAGTTGAGAAAACAAATTTTGGAGAACAAGAAGAAGAAATTTACCAATGTCATTGATAAAGCCCTAATTAATCTACATAACAATACTGATCTTGTAAACATCAATGAACTCAATGATATGAAGGATGAACTCAATGATCTGACAAAATTTATTGATAGCAATATCAATGAAGTCGAAAAAAAGTTGGAATCGATGAATATTGAAGCCGAAGAGCATGTTGTGAATGGAGGAGATATGCAGGCTCATGTTCATGGTTTGGATATCCAAAATGATTATCAATATCTTCCTTGGGATAACTTCGTGTTATCATATCATGATTATAATATGGACACAGATAGTCTTTGA 642 0.3474 MTRKKVKLQYIINQSSRRATYNRRKSSLLKKVNEISILCGIEACVVVYGENNVEPEVWPPGPRTQNVIQKFYGLSKLERNKREEDLEGYLKKRIEKSHEQLRKQILENKKKKFTNVIDKALINLHNNTDLVNINELNDMKDELNDLTKFIDSNINEVEKKLESMNIEAEEHVVNGGDMQAHVHGLDIQNDYQYLPWDNFVLSYHDYNMDTDSL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01360 213 Coils Coil 91 111 - -
Vifa2g01360 213 Gene3D - 13 171 IPR036879 GO:0003677|GO:0046983
Vifa2g01360 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa2g01360 213 PANTHER MADS BOX PROTEIN 3 162 - -
Vifa2g01360 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vifa2g01360 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01360 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01360 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01360 213 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vifa2g01360 213 Coils Coil 154 174 - -
Vifa2g01360 213 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01360 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01360 Vifa-Chr2 367900379 367901175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01360 1 157 Type I MADS-box Gene Family AT3G05860 38.217 1.06e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01360 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01360 - - psat:127078340 291.967