Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01358 ATGAGTAGAAAGAAGGTGAGACTTCAATACATAATCAATCAATCCAGCCGAAGGTCAACCTACAACAAAAGGAAATCAAGTTTACTGAAGAAGGTTAACGAAATCAGTATCCTTTGTGGAATAGAAGCATGTGTCGTAGTTTATGGTGAAAACAATGATGAACCAGAGGTTTGGCCACCTGGTCCAGGAACACAAAATGTGTTACACAAGTTCCGTGGTTTATCTGAACTCGAACGAAACAAAAGGACGGAGGATTTGGAGGGTTACTTGAAGAAAAGCATAGAGAAATCCCAGGAGCAGTTGAGAAAACAAATTTTGGAGAACAAGAAGAAGAGATTTACCAATTTCATTGATAAAGCCCTTATTAATCAGCATAACAATACCGATCTTGTGAGCATGAATGAACTCAATGATATGAAGGATGAACTCAATGATCTGACGAAATTTATTGATAGCAATATCAATGAAGTCGAAAAAATGTTGAATTCGATGAATGTTGAAGTAGAAGAGCATGTTGGTAATGGAATTGAAGCTATGATTGGAATTGAGCAGCAGGGTAATAGTGGTAATGCAATTAATGGAGGAGATATGCAGGCTGATGTCCATGGTTTGAATATCCAAAATGATCATCAATATGTTCCTTGGGACAACCCCATGTTATCATATCATGATTATAATATGGACACAGATAATCTTTGA 699 0.3677 MSRKKVRLQYIINQSSRRSTYNKRKSSLLKKVNEISILCGIEACVVVYGENNDEPEVWPPGPGTQNVLHKFRGLSELERNKRTEDLEGYLKKSIEKSQEQLRKQILENKKKRFTNFIDKALINQHNNTDLVSMNELNDMKDELNDLTKFIDSNINEVEKMLNSMNVEVEEHVGNGIEAMIGIEQQGNSGNAINGGDMQADVHGLNIQNDHQYVPWDNPMLSYHDYNMDTDNL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01358 232 PANTHER MADS BOX PROTEIN 3 149 - -
Vifa2g01358 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vifa2g01358 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa2g01358 232 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vifa2g01358 232 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01358 Vifa-Chr2 367677750 367678546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01358 1 173 Type I MADS-box Gene Family AT3G05860 35.593 1.58e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01358 SRF-TF 4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01358 - - psat:127078340 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01358 2 367677750 367678546 Vifa2g01358 2 367677750 367678546 ECH