Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01355 ATGAGAAGGAGAGTGAAACTTGCATTTATGGTCAACGATTCTGCAAGGAAAATAACTTACACCAAAAGAAAAAAGAGTCTAATAAAAAAGATTGATGAACTCGCAACTCTTTGTGGGATTGAAGCTTGTGCTATAGTCTATAGTGATTTTCATTCGGAGCCAGAGATTTGGCCTTCGCCGTGGGAGGTCCAAAGAGTCGTTACAAAGTTCAGAAGTTATTCTGATTTTGAGAAAGGTAAGAAGATGTTGAACCAAGAGAGTTTTTTGATTCAGAGGATTGGGAAGTCCAGAGAACAATTGGCAAAATTGGAGAAACACAATTGGGAGGTGGAGAAGTCATTGATCTTGTCTCAATGTCTTGTTAAAGAAAACTTTATCGACACTTTGAACCCAAATGCTTTGAATGACCTAGCATTTGATATTAATGAGATGCTGGAAAAAATCACTTCTAAGGTGAATGAACTCGATACAAATGAAACCACTTAA 486 0.3704 MRRRVKLAFMVNDSARKITYTKRKKSLIKKIDELATLCGIEACAIVYSDFHSEPEIWPSPWEVQRVVTKFRSYSDFEKGKKMLNQESFLIQRIGKSREQLAKLEKHNWEVEKSLILSQCLVKENFIDTLNPNALNDLAFDINEMLEKITSKVNELDTNETT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01355 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Vifa2g01355 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01355 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vifa2g01355 161 PANTHER MADS BOX PROTEIN 2 152 - -
Vifa2g01355 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01355 161 Gene3D - 12 93 IPR036879 GO:0003677|GO:0046983
Vifa2g01355 161 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Vifa2g01355 161 FunFam agamous-like MADS-box protein AGL80 12 96 - -
Vifa2g01355 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vifa2g01355 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vifa2g01355 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01355 Vifa-Chr2 366677885 366678370 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01355 1 152 Type I MADS-box Gene Family AT1G65300 44.805 1.04e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01355 SRF-TF 8.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01355 - - tpra:123904466 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01355 2 366677885 366678370 Vifa2g01355 2 366677885 366678370 ECH