Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01352 ATGACTAGGAAGAAGGTGAACCTTGCTTACATTACCAGTGACTCCAAGAGAAGGAGAACATTCCAGAAAAGAAAAAATGGTTTAATAAAAAAGGTTAATGAAATAAGCAGCTTATGTGGGATAGATGCATGTGCTATAATATTTGGTGAAAACGATCCGCAGCCAGAGGTTTGGCCATCTCGAGAGGGAGTCCAAAATGTATTATCAAGGTTTAATGGGTTGCCTGAATTGGAACAAAGCAAAAAAATGTTGAATCAAGAGAGCTTTTTGAAGCAAAGGATTCAAAAAGCACAAGAACATCTAAACAAACAAAAGATTGACAACAAAAGGAAGGAAGTGACACATCTTATGTTTCAATGCCTTAATGTTGGGCAAGTATTTGAAAGTGTTAACATGAGTGATCTCAATGATCTATCATGGTTGATTGATCAAAACTTGAAACAAATCAAAAGGCGAATCGATGAGACTCAAGTCAAACAGGTTGTCGAAAATCAAATCGAAATTTTTAAGGGAATGGATCAAGGAATGGTGAACAATGTTGATATATTACCATTTGAAAATGGTAATAGTCCACCAAATGGCTTTTGGCCTTAA 594 0.3569 MTRKKVNLAYITSDSKRRRTFQKRKNGLIKKVNEISSLCGIDACAIIFGENDPQPEVWPSREGVQNVLSRFNGLPELEQSKKMLNQESFLKQRIQKAQEHLNKQKIDNKRKEVTHLMFQCLNVGQVFESVNMSDLNDLSWLIDQNLKQIKRRIDETQVKQVVENQIEIFKGMDQGMVNNVDILPFENGNSPPNGFWP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01352 197 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 PANTHER MADS BOX PROTEIN 3 154 - -
Vifa2g01352 197 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vifa2g01352 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01352 197 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vifa2g01352 197 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01352 197 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01352 Vifa-Chr2 366377198 366378015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01352 1 154 Type I MADS-box Gene Family AT5G48670 57.143 1.70e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01352 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01352 - - tpra:123915093 224.942