Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01349 ATGGGAGAGCAAGAATTTTCTATTTCTATGATGATTCTATTTGCTTTGTTTATTAACATGAATATGTTAAGTGTTGAAGGTGATTATGGTGGTTGGGAGAGTGCTCATGCTACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGTGGGGCATGTGGATATGGAAATTTGTATAGTCAAGGATATGGAACAAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGATTAAGCTGTGGATCTTGCTATGAAATGAGATGCAATGATGATCCAAGGTGGTGCAAACCTGGTTCTATTATTGTTACTGCTACAAATTTCTGTCCACCAAATCCAGCTCAAGCAAACAATGATGGTGGATGGTGTAATCCTCCTTTGCAACATTTTGATATGGCTGAACCTGCTTTCCTTCAAATTGCTGAATATAGAGCTGGAATTGTTCCTGTCTCCTTTAGAAGGGTGCCATGTTTCAAAAAGGGAGGAGTAAGATTCACAATAAATGGTCACTCTTACTTCAACCTAGTTTTGGTCACCAATGTGGGTGGTGCTGGTGATGTTCATTCAATTTCCATCAAAGGCTCAAGAACTTCATGGCAACCTATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCTTACCTTAATGGACAAAGCCTCTCATTTCAAGTCACCACAAGTGATGGTAGAACTATAACAAGCTATAATGTTGCGCCAGCAAATTGGCAATTTGGTCAAACCTTTCAAGGAGCTCAATTTTAG 765 0.4013 MGEQEFSISMMILFALFINMNMLSVEGDYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPAQANNDGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCFKKGGVRFTINGHSYFNLVLVTNVGGAGDVHSISIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSYNVAPANWQFGQTFQGAQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vifa2g01349 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Vifa2g01349 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Vifa2g01349 254 Gene3D - 162 254 IPR036749 -
Vifa2g01349 254 FunFam Expansin 22 158 - -
Vifa2g01349 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vifa2g01349 254 Gene3D - 18 157 IPR036908 -
Vifa2g01349 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vifa2g01349 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vifa2g01349 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Vifa2g01349 254 SMART dpbb_1 67 152 IPR007112 -
Vifa2g01349 254 CDD DPBB_EXPA_N 31 157 - -
Vifa2g01349 254 FunFam Expansin 162 254 - -
Vifa2g01349 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Vifa2g01349 254 Pfam Lytic transglycolase 67 152 IPR009009 -
Vifa2g01349 254 PANTHER EXPANSIN-A15 11 254 IPR002963 GO:0009664
Vifa2g01349 254 SUPERFAMILY Barwin-like endoglucanases 13 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01349 Vifa-Chr2 365482361 365483768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01349 5 254 Expansin Gene Family AT2G40610 77.689 2.04e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01349 - K20628 gmx:100499976 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01349 2 365482361 365483768 Vifa2g01349 2 365482361 365483768 ECH