Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01348 ATGTTGAGTAACAGCTTCCTAGCATCTCATCTCCTATTGAATCTCAGTTTCCGTCAATTCCTTTTAAAGGTATTTACTTTTAAACTGTTGGATGCACTAAAAGATGAAAATAACTTTATAGTTTTATTGCAAGGGATTGCTGGCATCGGAAAAACTTCAATGGTCAATGAAGTGATAAGAGTATTAAAGAAATTCAAACAATTCACCCATGTTTTTCCTGTGACAGTTTCACGTACTCCTGATATAAAAAGGATTCAAGATGCTATTGCTAGCTCTTTAGGATTGCAGTTGAAATATTGTAATGAATCAAACCGACCCAAAAAACTAAGGGACAGATTAACAAACGGTGATAAAATTCTTTTGGTAATGGATGACATATGGGATGAAGTCCTACTTGACTTTCAAGCAATAGGGATTCCAAATTTAGCCAATCACAAAGGTTGTAGAATTCTTTTAACCTCACGCTTTAAACAAATATTCAATAAAATGAATTGTGATAGCAGAATTGAACTGGACCTTTTATCGGAAGAAGATGCATGGATCATGTTCCAAAAATACACCTTTATAAGTAATAGTTCCTCGAAAGAAGTGATTGGTATTGGACATAAAATTGTAAAGGAATGTAAACAATTACCAGCCACAATTGCAGTTTACGGCGGTAGTTTAAGAGGCCAAGATCAACAAGTGCATGAGTGGGATATGAAATTACAATCCTTGAAGAAGCGTGTATCATATCATAGGGTTGATGATGATATGATTGAACTTTATCAATGGTTGAAGCCTAACTATCATTTTATGAAAGATAAAGAAGTCATGGGATTATTCCTCTTATGTTCTGTATTTGGAGAAGATGAACAAATTTCTGTTGAAGTTTTAACCATAATTTGCACACGAGTGAGGCTTTTTGAGGAAGATTATCGGGGTCGTGACAAAGTAGTTGTAGCCATAAGTAAACTGCTAGATTCTTATTTGTTATTGGGGGTCGGCGAAAAACATGTAAACATGCATGGTTGGGTTCGTAAAGTGGCTCAATGGATAAAATACCAAGAGAAAAAGTCATTGGTAAAAAGGAAAGTAAATATTCAATATTTATCATGTGAAGGGAAGGATATGGATTTGATTTCCAGTAAGTTTAATGATTCCAAACTTGAGATTCTATTTGTCAACATGGACAGAGATGAAGACCGCAAATGTATGAAAGTTCCAAATTCTTTCTTTGAAAATATGGCCAATCTTCGAGTTTTGTGTTTTTTAGGCAATGATGATCCACCACTATCATTACCAAATTCAATTCAGCCGTTGACAAATATTCGATCTGTATTGGTTAATATTGTGGACTTAGGTGGCATCTCTATTATCGGAAGACTGCAAAGTCTTGAGACTTTTGATTTGTTTCAATGCACAATCAATGAACTTCCAAAAGAAATTGCAAATCTAGAGAAATTTAAATTATTGAACTTGGAGCATTGTGAAATTAGAATGGGTGATCCATTTGAAGTTATTAAAAGATGCTCGTCACTTGAAGAGTTGTATTTCATAGATAGTTTTAATGGTTTTTGTGGAGAAACAACATTACCTCAATTGCGAAGATATCATATATGTAAAGGGTGGGCTGTATGGAATAATCGGCTACCAAGATGTGTGGTTTCAACGTCTTCCATTCCATTGGTTGATGCTCATCAGCCGCATGACTACTCAGTGGTCCTGGCATCAGAAATCCTCTCACCATTTTCAATTATGGAATCAAATTCATATCGCCTTCATATATGGGAGCGTACTCAATGTCTTCAAATACAATCAATGATCCTTTACAATGTTAGAAAGATTGAAGTGTCTCAGTTCTCTGTGATAAAATCGGAATATGGTGATGACCAAATAGCCATACCTACAGTGGAAGATGTTGATCATGGAGAATCACACGAAACAACTCAGACTAATAATCAAGATGGTCGGTTGACTAAAGTGAAGTCGCAATCAAATAAGCTGAATCAAGGCACATTTTGCAATTCCAATCCTGGCACTTTCATTTGCTCAAGAGAAACTCATCTTCTATTCATCTAA 2061 0.3518 MLSNSFLASHLLLNLSFRQFLLKVFTFKLLDALKDENNFIVLLQGIAGIGKTSMVNEVIRVLKKFKQFTHVFPVTVSRTPDIKRIQDAIASSLGLQLKYCNESNRPKKLRDRLTNGDKILLVMDDIWDEVLLDFQAIGIPNLANHKGCRILLTSRFKQIFNKMNCDSRIELDLLSEEDAWIMFQKYTFISNSSSKEVIGIGHKIVKECKQLPATIAVYGGSLRGQDQQVHEWDMKLQSLKKRVSYHRVDDDMIELYQWLKPNYHFMKDKEVMGLFLLCSVFGEDEQISVEVLTIICTRVRLFEEDYRGRDKVVVAISKLLDSYLLLGVGEKHVNMHGWVRKVAQWIKYQEKKSLVKRKVNIQYLSCEGKDMDLISSKFNDSKLEILFVNMDRDEDRKCMKVPNSFFENMANLRVLCFLGNDDPPLSLPNSIQPLTNIRSVLVNIVDLGGISIIGRLQSLETFDLFQCTINELPKEIANLEKFKLLNLEHCEIRMGDPFEVIKRCSSLEELYFIDSFNGFCGETTLPQLRRYHICKGWAVWNNRLPRCVVSTSSIPLVDAHQPHDYSVVLASEILSPFSIMESNSYRLHIWERTQCLQIQSMILYNVRKIEVSQFSVIKSEYGDDQIAIPTVEDVDHGESHETTQTNNQDGRLTKVKSQSNKLNQGTFCNSNPGTFICSRETHLLFI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01348 686 Gene3D - 22 170 IPR027417 -
Vifa2g01348 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 266 IPR027417 -
Vifa2g01348 686 PRINTS Disease resistance protein signature 477 493 - -
Vifa2g01348 686 PRINTS Disease resistance protein signature 40 55 - -
Vifa2g01348 686 PRINTS Disease resistance protein signature 113 127 - -
Vifa2g01348 686 PRINTS Disease resistance protein signature 208 222 - -
Vifa2g01348 686 SUPERFAMILY L domain-like 335 528 - -
Vifa2g01348 686 Pfam NB-ARC domain 31 245 IPR002182 GO:0043531
Vifa2g01348 686 Gene3D Ribonuclease Inhibitor 340 550 IPR032675 -
Vifa2g01348 686 Gene3D - 173 257 IPR042197 -
Vifa2g01348 686 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 28 619 - -
Vifa2g01348 686 MobiDBLite consensus disorder prediction 634 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01348 Vifa-Chr2 365334791 365337396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01348 45 415 WRKY Transcription Factor Family AT5G45050 22.308 9.82e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01348 - - psat:127084407 622.468