Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01345 ATGTGGATGAAAATAATATGTTTTCTCTTTCACTTTGGAACAAGGACAGGTTGTTTTTGCTATTTCGATTCTAGTATAGTAATAAAGAGGAAGATAAATAAAATAAAAGTCATGTGCAACATATCAAATAGAAAACCCTCTCAAGAATATGGAAGACAGGAAGAACTGCATCATAAGGTTTGTGATTTGCTTGTGTTTTCAGCCACAGATGATGTAAAAGCTTTCAAAGAGGCTGTTGAAAAACACAATCATGATGTCAATGAGGTCGGGTTGTGGTATGGAAGAAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTTATGATTGCTTCCTTATTTGGAAGCAAGGCTGTGTTGTCTTATATTCTCGAAACCGGCCGTGTTGAGGTAAACCAAGCGTGCGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTGTGCTGCTTCTGCCGAGGTTATCAAGCTTTTGCTTGAAGCATCTGCAGATGTTAATTCTGTTGATGCGATGGATAAACGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATCTCCGGTTCAAAGAAGAGGCTACTACAAGCCATACTAGATGGTACTGATAATATCGATGATGACAATTATTTCCTTAAGGAGGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATTAGTACACCTCGAATCGAGAGGAAAGATTATCCGATCGATCTATCTCTACCCGACATAAATAATGGAATATATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGACTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATCATATATCATTACACCTGCGTCCCTTGTCCTGAGTTTCGGAAGGGGTCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAGGATGAGGCCGAATGCACCCGAAGAGTCTGCTTTTTCGCTCACAAACCCGAGGAGCTTCGGCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTAGTGCTTCTTCAATGGATTATTTCTCATTGAGCTCTCCGTCCAGTTCGACAAAGTCCATGTCGACACCGCCTTTGACTCCATCTGCAGCGTCATCTCCTTCAGGCGGAACCATGTGGCCGACTCAGTCTCATGCTGCAGTTCCTACACTTCAATTGTCGAGAAGCAGATTGAAAACTGCATTGAATGCTAGAGATGATACTGAATTTCTCGAACTTGAAAATCGGCTTTTGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTCCCTTCAGATAGGCTTGCAGGTGTGAATCCTGCCAACCTCGAAGACATTCTCGGTTCCGAGATGCAATCTCCAACATCAATTCAGGTGCATCCGAATGTGACTCAACAACTTTGGGGCTTTTCTTCTGACCTTACCAATACAAGAAATGATGCCTTGTCGAAGCGGAGCCAGAGCTTTATCGAGCGCAGCAACATGGGAAGCTTTAGTTCTAAGCTTCCTTGTGCTACCTCGGCTGCTATGGAGCCATATACTAACTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCATGGTGATGAACTGAATAAGATGAAAAAGTCTTATTCTTTCGGCTTTGGAAACCAAGAATGCAATTCAACAATGGCTGCAAAAAGTGCTGATGAGCAAGATGTATTAATAAGGCAGGAATCATGGGTTAATTCACTAGTGAAGGATGCACCAACAGTGCAATCAGATCAATATTGTTTTGAAGTGTAA 1899 0.4234 MWMKIICFLFHFGTRTGCFCYFDSSIVIKRKINKIKVMCNISNRKPSQEYGRQEELHHKVCDLLVFSATDDVKAFKEAVEKHNHDVNEVGLWYGRRIGSKEMGYEERTPLMIASLFGSKAVLSYILETGRVEVNQACGSDRATALHCAVSGCCAASAEVIKLLLEASADVNSVDAMDKRCIDLIVMMPNSISGSKKRLLQAILDGTDNIDDDNYFLKEVGFQMEKQQQDISTPRIERKDYPIDLSLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPIIYHYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYFSLSSPSSSTKSMSTPPLTPSAASSPSGGTMWPTQSHAAVPTLQLSRSRLKTALNARDDTEFLELENRLLQKLMIEEMTGLSFPSDRLAGVNPANLEDILGSEMQSPTSIQVHPNVTQQLWGFSSDLTNTRNDALSKRSQSFIERSNMGSFSSKLPCATSAAMEPYTNFSGWGSPDGKLDWSIHGDELNKMKKSYSFGFGNQECNSTMAAKSADEQDVLIRQESWVNSLVKDAPTVQSDQYCFEV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01345 632 PANTHER UNKEMPT FAMILY MEMBER 66 620 IPR045234 -
Vifa2g01345 632 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Vifa2g01345 632 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Vifa2g01345 632 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Vifa2g01345 632 Pfam Ankyrin repeats (3 copies) 92 174 IPR002110 GO:0005515
Vifa2g01345 632 ProSiteProfiles Ankyrin repeat profile. 140 175 IPR002110 GO:0005515
Vifa2g01345 632 MobiDBLite consensus disorder prediction 393 422 - -
Vifa2g01345 632 SMART ANK_2a 105 135 IPR002110 GO:0005515
Vifa2g01345 632 SMART ANK_2a 140 172 IPR002110 GO:0005515
Vifa2g01345 632 FunFam Zinc finger CCCH domain-containing protein 66 256 324 - -
Vifa2g01345 632 Gene3D - 299 361 - -
Vifa2g01345 632 Gene3D - 58 201 IPR036770 -
Vifa2g01345 632 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Vifa2g01345 632 SUPERFAMILY Ankyrin repeat 70 188 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01345 Vifa-Chr2 365099887 365102100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01345 19 620 C2H2 Transcription Factor Family AT5G12850 38.179 5.41e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g01345 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01345 - - psat:127084564 881.322