Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01329 ATGAGAGAAGCTTGGAGTTTCATAACGTTATGCTGCATGGTGATGGTGTTTATTCCTTTGATTCATAAAGAAAGAGTGATTGATACATGCTTTTGGTTTGGAGTTGAATATTGCTCTCATGGAAATGTTGTGGACTTGCAAATTGGCCAGCAAAGGGATATACCATACACTAGGAAACTTACTCAAACATCAAATTCTGCTAGCTCATACAATCACAAAAACACTCTTTCACCATCATCATCACCTTCATCACCACTTTCTAGTTCTACACATATTTCACAATCATCTTCACTACTTTCCATATCAGACCCTCCCTTAGATTCACCATCACCAATAACATCACCACAACTTTCCCCTTCACCATCATCCTCACCTGAGGCAGCACCAACAACTTCATACTTACTACTTACATCATCAAATCCACCTACAGCTATGTGCACACCACAACTTTCTAATTCGATTTCAGCACCTTCTCCTTTTTCATCTTCAAACCAAAAGAATTCAAAAAGTATAAACCAAAAGAAACATTTTGTCATTATATGGTCAACAGTTGGAGGATTTTCCTTCCTTGTTTTGGTGTCATGCACTGTTTTCATTTGCTTCAGAAGTAGTAAGGTTGTAACTGTCAAACCTTGGACCACAGGGTTGAGTGGCCAGCTTCGTAAAGCGTTCATAACAGGTATTCCGAGTCTTAAACGAGCCGAACTCGTGGTAGCGTGTGAAGATTTCAGCAACATTATCGGTTCACTGAAAGATGAGACTATCTATAAAGGAACACTTTCGAGTGGAGTTGAGATAGCGGTAGTATCTTCTGCAGTGGCTTCTTCCAAAGAATGGTCGAAAAATTTGCAAGCTCAGTTCAGAGACACGATTGAGACGTTATCGAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGCTATTGTGAAGAGAATAAACCATTCACAAGGATGATGGTTTTTGAGTATGCTCCGAACGGAACATTGTTTGAGCATCTACATATTAGAGAAGCGGAACAACTCGACTGGCGAATGAGAACGAGGATAGCTATGGGAATATCCTACTGTCTAGATCACATTCATCAACTCACGCCACCAACTGCGCACAAAAACTTGTTATCTTCCTCTATATATCTCACAGAAGATTATGCTGCTAAGATATCAGACCTTAGTTTCTGCGTGGACGAAGTTGATACAAAGAAGAGTTCTGAGAAAACATCAGCAGAAGAAATAAAGGACAATGTTTATAGTTTTGGCATAATATTGTTTGAGCTGATAACAGGAAAAATTCCATATGCGGTAGAAAACGGCTTTGCAACAGATTGGGCTGCAGAATATATAAGAGGACATCCTTTGAGAGAGTTGGTGGATACAAACTTGAAATCTTTGAAAGATGATGAAATTGAGAAATGGTCTGAAGTGATTAACAATTGTGTGGATCCTGATCCGGAGAAAAGGCCATCGATGAAACAGGTTACGTCTATGTTGAAGGAAATCACTTCTATGGAGCCTGATGGAGCAATGCCGAAATCGTCTCCTCTTTGGTGGGCAGAAATTGAAATCATGACCTCGGACTTATGTTGA 1584 0.3965 MREAWSFITLCCMVMVFIPLIHKERVIDTCFWFGVEYCSHGNVVDLQIGQQRDIPYTRKLTQTSNSASSYNHKNTLSPSSSPSSPLSSSTHISQSSSLLSISDPPLDSPSPITSPQLSPSPSSSPEAAPTTSYLLLTSSNPPTAMCTPQLSNSISAPSPFSSSNQKNSKSINQKKHFVIIWSTVGGFSFLVLVSCTVFICFRSSKVVTVKPWTTGLSGQLRKAFITGIPSLKRAELVVACEDFSNIIGSLKDETIYKGTLSSGVEIAVVSSAVASSKEWSKNLQAQFRDTIETLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWRMRTRIAMGISYCLDHIHQLTPPTAHKNLLSSSIYLTEDYAAKISDLSFCVDEVDTKKSSEKTSAEEIKDNVYSFGIILFELITGKIPYAVENGFATDWAAEYIRGHPLRELVDTNLKSLKDDEIEKWSEVINNCVDPDPEKRPSMKQVTSMLKEITSMEPDGAMPKSSPLWWAEIEIMTSDLC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01329 527 Gene3D Phosphorylase Kinase; domain 1 218 323 - -
Vifa2g01329 527 PANTHER PROTEIN MALE DISCOVERER 2 66 523 - -
Vifa2g01329 527 Pfam Protein tyrosine and serine/threonine kinase 247 496 IPR001245 GO:0004672|GO:0006468
Vifa2g01329 527 ProSiteProfiles Protein kinase domain profile. 241 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01329 527 Gene3D Transferase(Phosphotransferase) domain 1 324 509 - -
Vifa2g01329 527 MobiDBLite consensus disorder prediction 63 134 - -
Vifa2g01329 527 SUPERFAMILY Protein kinase-like (PK-like) 227 496 IPR011009 -
Vifa2g01329 527 MobiDBLite consensus disorder prediction 119 134 - -
Vifa2g01329 527 MobiDBLite consensus disorder prediction 63 107 - -
Vifa2g01329 527 FunFam Inactive receptor-like serine/threonine-protein kinase 215 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01329 Vifa-Chr2 359486138 359496138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01329 223 503 Receptor kinase-like Gene Family AT1G67720 32.566 1.77e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa2g01329 PK_Tyr_Ser-Thr 2.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01329 - - gmx:100814122 564.688