Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01308 ATGGGATCATCAGGTTCTTCACCTTGTGCTTGTTGCAAATTATTGAGAAGACGTTGCACACAAGAATGTATCTTTGCTCCTTATTTTCCTTCCGATGACCTACGCAAGTTTGCCATGGTTCATAAGGTCTTCGGTGCTAGCAATGTCACCAAAATGCTCCAGGAACTTCCGATTAATCAAAGAGCAGAAGCAGTGAATAGTTTAGTTTATGAAGCAAATGCAAGAGTGAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATATCTTCAAACTCAAGTTTCACAATTACAAATGCAACTTGCAATGGCTCAAGCTGAGATTCTTTGCATTCAGATGCAGCAAGACTCTACTGCTACGGTTACCAACACATTACCAACATATGTTGACCAAGATGACAGATTGATGCTCTTATCTGAAAATAGTAACTGCTATGGAGTTCTTCCACACTATATTAACTTTCCCTCTTCCTCTTCTTCTTCATCTAATGTATTCCAACACTTTGAGCCTCTCAAGAGAGACTCTTTTGGGCTTGAATTTGACAGCTAA 549 0.3971 MGSSGSSPCACCKLLRRRCTQECIFAPYFPSDDLRKFAMVHKVFGASNVTKMLQELPINQRAEAVNSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAMAQAEILCIQMQQDSTATVTNTLPTYVDQDDRLMLLSENSNCYGVLPHYINFPSSSSSSSNVFQHFEPLKRDSFGLEFDS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01308 182 Coils Coil 87 107 - -
Vifa2g01308 182 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vifa2g01308 182 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vifa2g01308 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01308 Vifa-Chr2 353331532 353332167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01308 1 138 AS2 family AT2G30130 74.638 2.49e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g01308 LOB 4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01308 - - gmx:100819419 238.424