Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01307 ATGATGCAAATGACTCATTCACCATTCTTCTTCACACTTTTCATCTTACTCTTCCATTTTCCACATTCATCATCCTTTTCCATCTCAGTGGAGAATCATGAAGAAAACGCTATAGTCTCTCCCAAAGGCATATTCACAGCAGGCTTTTATCCTGTAGGGGAGAATGCTTATTCCTTTGCCATATGGTTCACTCAAAAACATAAAAACCTCAACAACAATGCCACCATTGTTTGGATGGCAAATCGTGACCAACCGGTTAACGGTAAACATTCAACACTTTCCCTTCTCAAAACAGGCAACCTTGTATTAACAGATGCAGGACAGTTCAGTGTTTGGTCCACAAACACTAACTCGTCCAAACAACTCGAGTTGTTTTTGTACGATACGGGAAATCTCGTTCTCAGAGAACATAACATCAATGGTTTCATTTTGTGGCAAAGCTTTGATTTTCCAACAGATACCCTGCTTCCAGATCAAACTTTCACAGGGTACATGAACCTTGTTTCTTCCAAAAGTGGCACCAACTATTCCTCTGGCTCATACAAGCTTTTTTTCGATAACAACAATCTTCTCCGTCTTCTCTATGACAGCCCTCGAGGCTCAAGCGTTTATTGGCCAGATACATTGCTTCTAGGTTGGCAAGCTTCTAGATCCACGTACAATAGTAGCAGGGTAGCAACATTGAATCGTTTGGGAAACTTCAGTTCTTCAGATTATTTCAATTTCAAAACAACTGATTATGGAACAGTGCTGCAACGAAGGGTGACCCTTGATTTTGATGGAAATGTTCGTGTTTATAGCAGAAAACATGGGCAAGAGCAGTGGTCCGTATCAGGACAATTCCTCCAACAACCTTGTCAAATAGACGGGATTTGTGGACCTAATAGCACTTGCAGTTATGATCCAAGAACCGGTAGAAAATGTTCGTGTCTTCCCGGATATAACATCGTCAATAACCACGACTGGTCTCAAGGGTGCAAACCGAGCTTTCAATTTTCATGCAACAAGAAGACAAAATATCGCTTTGAATTCTTACCTCATGTTGAATTTTACAACTACGACTATGGATTCCATAAAAATTTCACCTACAAACAATGTAAGCATTTGTGCTTACGATTGTGCGAATGCATAGCCTTCCAATTTCGTTATGTGAAGAGCAAGGGTTTATATAATTGTTACCCAAAGATGCAGTTACTAAACGGTCATCGTTCGACAAAGTTTAGAGGTTCACTTTACTTGCGATTACCAAAACACAATATTGTTTTTCCTGGTGAATATGATAACTTGGTTTGTTCGAGAAATAAGGGAGTTAAACAGCTGGGAAGATCATACATTAGTGAAAAAGAAAATGGATCACTGAAGTTCATGCTTTGGTTTGCAAGTGGCTTGGGTGGAATTGAGATCTTATGCTTCTTTCTTGTAGGGTGTATCTTATTTAAGAATAGCAAGAAATCTAGAGTTGATAACCATGGGTATGTTCTAGCTGCAGCAACAGGGTTTAGGAAATTCAGTTATTCAGAATTGAAACAAGCTACAAAAGGTTTTAGTCAAGAGATTGGAAAGGGTGCAGGAGGAACTGTGTATAAAGGTGTTTTATCTGATACTCGAGTTGCTGCGATAAAGCGTTTGCATGAAGCAAATCGAGGAGAGAGTGAGAGTGAGTTTCTTGCTGAAGTTAGCATCATTGGAAGGCTTAATCACATGAATGTGATTGGAATGTGGGGTTATTGTGCAGAGGGAAAGCATAGGTTGTTGGTTTATGAGTACATGGAAAAGGGTAGTTTAGCTCATAATCTTTCATCAAATGAACTTGATTGGGATAATAGGTATGACATAGCTATGGGAACTGCAAAGGGTCTTGCTTATTTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATAAAGCCACAAAACATTCTTATTGACTCTGATTACCAACCTAAGGTAGCAGATTTTGGTTTGTCTAAGCTATTGAATAGAGATGACCTTGATAATTCAAATTTCTCAAGGATAAGAGGGACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCAGATCACTTCTAAGGTGGATGTTTATAGCTATGGAGTTGTGGTGTTGGAGATGATTACTGGAAAGAGTCCAACAACGGGTATACAGATCAAGGAAGAGTTGATTAATGAGAGGTTGGTGACATGGGTCAGGGAGAAAAGGAGAAATGGATTAGATGTTGGTTGTTGGGTAGAACAAATTGTTGATCCTAAATTAGGATCAAATTATGATGTTAAGAAAATGGAGACTTTGGCAAATGTTGCTTTGGATTGTGTAGGAGAAGATAAAGATGTTAGACCCACCATGAGTCAAGTTGTTGAGAGACTTCTAAGTCATGAGCATAATTATTGA 2394 0.3906 MMQMTHSPFFFTLFILLFHFPHSSSFSISVENHEENAIVSPKGIFTAGFYPVGENAYSFAIWFTQKHKNLNNNATIVWMANRDQPVNGKHSTLSLLKTGNLVLTDAGQFSVWSTNTNSSKQLELFLYDTGNLVLREHNINGFILWQSFDFPTDTLLPDQTFTGYMNLVSSKSGTNYSSGSYKLFFDNNNLLRLLYDSPRGSSVYWPDTLLLGWQASRSTYNSSRVATLNRLGNFSSSDYFNFKTTDYGTVLQRRVTLDFDGNVRVYSRKHGQEQWSVSGQFLQQPCQIDGICGPNSTCSYDPRTGRKCSCLPGYNIVNNHDWSQGCKPSFQFSCNKKTKYRFEFLPHVEFYNYDYGFHKNFTYKQCKHLCLRLCECIAFQFRYVKSKGLYNCYPKMQLLNGHRSTKFRGSLYLRLPKHNIVFPGEYDNLVCSRNKGVKQLGRSYISEKENGSLKFMLWFASGLGGIEILCFFLVGCILFKNSKKSRVDNHGYVLAAATGFRKFSYSELKQATKGFSQEIGKGAGGTVYKGVLSDTRVAAIKRLHEANRGESESEFLAEVSIIGRLNHMNVIGMWGYCAEGKHRLLVYEYMEKGSLAHNLSSNELDWDNRYDIAMGTAKGLAYLHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLNRDDLDNSNFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGVVVLEMITGKSPTTGIQIKEELINERLVTWVREKRRNGLDVGCWVEQIVDPKLGSNYDVKKMETLANVALDCVGEDKDVRPTMSQVVERLLSHEHNY 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01307 797 SMART serkin_6 513 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01307 797 Gene3D Phosphorylase Kinase; domain 1 477 589 - -
Vifa2g01307 797 FunFam Putative receptor protein kinase ZmPK1 20 150 - -
Vifa2g01307 797 Pfam Protein kinase domain 516 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01307 797 ProSiteProfiles Protein kinase domain profile. 513 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01307 797 SMART blect_4 29 151 IPR001480 -
Vifa2g01307 797 Gene3D Transferase(Phosphotransferase) domain 1 590 797 - -
Vifa2g01307 797 Gene3D - 29 150 IPR036426 -
Vifa2g01307 797 ProSiteProfiles Bulb-type lectin domain profile. 23 147 IPR001480 -
Vifa2g01307 797 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Vifa2g01307 797 CDD STKc_IRAK 519 790 - -
Vifa2g01307 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vifa2g01307 797 FunFam Serine/threonine-protein kinase 590 797 - -
Vifa2g01307 797 Pfam S-locus glycoprotein domain 236 315 IPR000858 GO:0048544
Vifa2g01307 797 PANTHER OS07G0415500 PROTEIN 10 792 - -
Vifa2g01307 797 FunFam S-receptor-like serine/threonine-protein kinase 481 589 - -
Vifa2g01307 797 PIRSF SRK 1 796 IPR024171 GO:0004674
Vifa2g01307 797 SUPERFAMILY Protein kinase-like (PK-like) 494 791 IPR011009 -
Vifa2g01307 797 CDD B_lectin 35 151 IPR001480 -
Vifa2g01307 797 CDD EGF 285 314 - -
Vifa2g01307 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 206 IPR036426 -
Vifa2g01307 797 Pfam D-mannose binding lectin 75 161 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01307 Vifa-Chr2 353308139 353310532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01307 503 790 Trihelix Transcription Factor Family AT5G38560 42.321 3.90e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g01307 Pkinase 2.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01307 - - gmx:100806357 1067.76