Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01306 ATGCCAGCAATGTCTCCTTCACCATCACAAATCTTCACCACACTCCTCATCCTCCTCTTCCATTTCCACCACGTCTCTTCATTCTCCCTCTCAGTAGAAAACCCTCAACAAAACATCATACTCTCACCCAAACACACATTCACTGCAGGCTTCTACCCTATAGGTGAAAATGCTTATTCATTCGCCATCTGGTTCACGCAAAAACACAAATACCTTAACAACAACAAAACCACCATTGTTTGGATGGCAAATCGCGACCAACCCGTCAACGGAAAACGCTCAACGCTTTCTATTCTCAAAACCGGCAACCTCGTCTTAACCGACGCAGCTCAATCCATTGTTTGGTCCACGGACACCACCTCATCGAAACCACTCAAATTACTCTTACACGACACCGGTAACCTCGTTCTTCAAGAACTAAACTCAAACGGTTCCATCAATATCAATAGCGATAGCACTATATGGCAAAGCTTCGATTTCCCAACAGATACACTTCTCCCACACCAACCCCTCACCAGATTCACCAAACTCGTTTCGTCTCGAAGCGAAACAAATCAATCATCTGGTTTCTACAAACTCTTCTTCGACAACGACAACGTTCTCCGTCTTCTTTACGAAGGTCCAAGAGTTTCAAGTGTTTTTTGGCCAGATCCTTGGGTTACTAGCAACGGTGCTGCTGGTAGTGGTAGCAGATCCACATTCAACAGTAGCAGAACCGCTTCTTTGGATTCATTTGGTAGGTTTAGTTCTTCTGATGATTTCATTTTCAATTCTTCTGACTATGGAACTTTGTTGCAACGTAGACTTACACTTGACCATGATGGGAATGTTCGCATTTATAGCAGAAAAGATGAGGAACAAAGTTGGTTTGTTTCTGGTCAGTTTAAACAACAACCTTGTTTTGTTCATGGGATTTGTGGACCGAATAGTACTTGTACTAATCATCCAATCAATGGTAGAAAGTGTTCTTGTTTACCTGGTTATGTTTGGATTAATGATCAAGATAATTATCAAGGTTGCAGACCTAATTTTCAGCTTTCATGCAGTAACAAGACTAACGAGTCAAGGTTTTTGGCTTTACCTCATGTGGATTTTTATGGATATGATTATGGTTTTTTTGTGAATAAAACTTACAAAGAATGTGAGGATCTGTGTTCACAATTGTGTGGTTGTGCTGGGTTTCAGTATACCTTTACAGCTGAATATGGTGGTGTTTATTGGTGTTATCCAAAGATTCAGTTACTTAATGGCCATCGTTCACAGAGTTTTCTAGGATCGTTTTACTTGAAATTGCCGAAAAATAGTGATTTTGTTGATCAGATGAAGATTCAACAAAAAGGGATGGGAATGGTTTGTTCAACGAATGGAGTAGTAGAGCTTGAGCGAGAATACATAAAAGAGAAAGAAAATGGTTCCTTGAAGTTCATGCTTTGGTTTGCTGGTGGCTTAGGTGGAGTTGAGCTCTTGGGATTTTTTCTTGTGTGGGTTTTCTTGTTTAGAAGTAGCAAAAACTCTGATGAAGACAATAATGGGTATATTCTAGCAGCCGCGGGGTTTAGGAAATTTAGTTACTCTGAATTGAAACAGGCTACAAAAGGTTTTAGTCAAGAGATTGGAAGAGGTGCTGGTGGAAGTGTCTATAGGGCTGTTTTATCTGATAATCGTGTCGCTGCGATAAAGCGTCTGCATGAAGCAAATAACGGAGAAAGTGAGAAGGGAAAGCATAGGTTGTTGGTTTATGAGTACATGGAAAAGGGTAGTTTAGCTCATAATCTTTCATCAAATGAACTTGATTGGGGTAAAAGGTATAACATTGCTATGGGAACTGCAAAGGGTCTTGCTTATTTACATGAGGAGTGTTTGGAGTGGATTTTGCATTGTGATATAAAGCCACAAAACATTCTTATTGACTCTGATTACCAACCTAAGGTAGCAGATTTTGGTTTGTCTAAGCTATTGAATAGAGATGACCTTGATAATTCAAATTTCTCAAGGATAAGAGGGACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCAGATCACTTCTAAGGTGGATGTTTATAGCTATGGAGTTGTGGTGTTGGAGATGATTACTGGAAAGAGTCCAACAACTGGTATACAGATCAAGGAAGAGTTGATTAATGAGAGGTTAGTGACATGGGTCAGGGAGAAAAGGAGAAATGGATTAGATGTTGGTTGTTGGGTAGAACAAATTGTTGATCCTAAATTAGGATCAAATTATGATGTTAAGAAAATGGAGACTTTGGCAAATGTTGCTTTGGATTGTGTAGGAGAAGATAAAGATGTTAGACCCACCATGAGTCAAGTTGTTGAGAGACTTCTAAGTCATGAGCATAATTATTGA 2373 0.3974 MPAMSPSPSQIFTTLLILLFHFHHVSSFSLSVENPQQNIILSPKHTFTAGFYPIGENAYSFAIWFTQKHKYLNNNKTTIVWMANRDQPVNGKRSTLSILKTGNLVLTDAAQSIVWSTDTTSSKPLKLLLHDTGNLVLQELNSNGSININSDSTIWQSFDFPTDTLLPHQPLTRFTKLVSSRSETNQSSGFYKLFFDNDNVLRLLYEGPRVSSVFWPDPWVTSNGAAGSGSRSTFNSSRTASLDSFGRFSSSDDFIFNSSDYGTLLQRRLTLDHDGNVRIYSRKDEEQSWFVSGQFKQQPCFVHGICGPNSTCTNHPINGRKCSCLPGYVWINDQDNYQGCRPNFQLSCSNKTNESRFLALPHVDFYGYDYGFFVNKTYKECEDLCSQLCGCAGFQYTFTAEYGGVYWCYPKIQLLNGHRSQSFLGSFYLKLPKNSDFVDQMKIQQKGMGMVCSTNGVVELEREYIKEKENGSLKFMLWFAGGLGGVELLGFFLVWVFLFRSSKNSDEDNNGYILAAAGFRKFSYSELKQATKGFSQEIGRGAGGSVYRAVLSDNRVAAIKRLHEANNGESEKGKHRLLVYEYMEKGSLAHNLSSNELDWGKRYNIAMGTAKGLAYLHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLNRDDLDNSNFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGVVVLEMITGKSPTTGIQIKEELINERLVTWVREKRRNGLDVGCWVEQIVDPKLGSNYDVKKMETLANVALDCVGEDKDVRPTMSQVVERLLSHEHNY 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01306 790 SUPERFAMILY Protein kinase-like (PK-like) 513 784 IPR011009 -
Vifa2g01306 790 PIRSF SRK 3 789 IPR024171 GO:0004674
Vifa2g01306 790 SMART serkin_6 532 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01306 790 CDD B_lectin 40 161 IPR001480 -
Vifa2g01306 790 SMART blect_4 31 161 IPR001480 -
Vifa2g01306 790 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Vifa2g01306 790 Gene3D Transferase(Phosphotransferase) domain 1 583 790 - -
Vifa2g01306 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 215 IPR036426 -
Vifa2g01306 790 ProSiteProfiles Protein kinase domain profile. 499 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01306 790 CDD PAN_AP_plant 344 432 - -
Vifa2g01306 790 Gene3D - 161 291 IPR036426 -
Vifa2g01306 790 CDD EGF 299 328 - -
Vifa2g01306 790 FunFam Serine/threonine-protein kinase 583 790 - -
Vifa2g01306 790 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Vifa2g01306 790 Gene3D Phosphorylase Kinase; domain 1 498 577 - -
Vifa2g01306 790 Pfam D-mannose binding lectin 78 173 IPR001480 -
Vifa2g01306 790 ProSiteProfiles EGF-like domain profile. 296 334 IPR000742 -
Vifa2g01306 790 PANTHER OS07G0415500 PROTEIN 15 785 - -
Vifa2g01306 790 Coils Coil 787 790 - -
Vifa2g01306 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vifa2g01306 790 Pfam Protein kinase domain 572 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01306 790 Gene3D - 32 159 IPR036426 -
Vifa2g01306 790 Pfam S-locus glycoprotein domain 262 329 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01306 Vifa-Chr2 353286549 353288995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01306 522 783 Trihelix Transcription Factor Family AT5G38560 38.356 3.44e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g01306 Pkinase 2.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01306 - - gmx:100806357 1014.22