Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01305 ATGAAGATGATGTTGAATAATCTTGCAGGTCCAGGCAATGGTAGAGAAAGAATCTCACAAATTTGCAGAGGATTGAAAAGGGTCCCAAAAAGGGTGTTAAAGCTCCAGTTGCAGCTTCCAAGAAGAAGCCAGAGAAGGTTACAAATCCTCTTTCAAAAGGAGGAAATATCAAAAGTTGATATTGCCTTATCAAGAAAGCTCGTTGATTCTGCTGCTCCTCTTATGAAAGAACGCAAACGCTTTCAGAGCGCGATCGATGAGTTGAAGAAGCGTCAAATGGTGCTGGAGACAGAATCTGCAAGAATCAGTGGTGAGTTAAAGTTAAAGTTAGGTCCTATTTATGAATATGAAGAGCCTTCCATAGCTGAATTGAGAATTGAGTGTTATCATCTTTATGAAAAGGATTGTAGATTTAGGGGGATACCTTTCATCCCTAAACTTGATGGGATGGAATGTGAGAATTTGGTGGCTGTGTTTGGTGGCACTGCGAAGGAACGTCACTTGATTAAGTTCTTGAACGATCCTGTTAGGAAAGAGCTCATTGAAACTTACTTTAATGGCATACTGTTTAAGGGGCCTGAGGATAAAGCAGAAAAGAAGGATAGGCTTTTGAAAAGGGCTCAGGCAGAGTCTGAGGGTAAAACAGTTGAGACAAAGAAGCCTATTAATGTCAAGTATGGTCTCAATCATGTTACCTACCTCATTGAGCAGAATAAAGCCCAGCTTGTTGTGATTGCTCATGATGTTGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGTAGGAAAATGGAAATTCCATACTGTATTGTTAAGGGTAAGGCTCGCCTTGGAACTGTTGTCCATAAGAAAATTGCAGCTGTTTTGTGCTTGACAACTGTTAAAAATGAAGATAAAATGGAGTTTAGCAGGGTCCTTGAAGCAATCAAGGCAAACTTCAATGACAAGTATGAAGAGTACAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAAACTAAGGCGAAGGAAAGGCTTATTGCCAAGGAAGCTGCCCAGAGGATGACTTAG 1065 0.4122 MKMMLNNLAGPGNGRERISQICRGLKRVPKRVLKLQLQLPRRSQRRLQILFQKEEISKVDIALSRKLVDSAAPLMKERKRFQSAIDELKKRQMVLETESARISGELKLKLGPIYEYEEPSIAELRIECYHLYEKDCRFRGIPFIPKLDGMECENLVAVFGGTAKERHLIKFLNDPVRKELIETYFNGILFKGPEDKAEKKDRLLKRAQAESEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKIAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01305 354 PRINTS Ribosomal protein L7A family signature 281 305 IPR001921 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A family signature 220 240 IPR001921 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A family signature 313 333 IPR001921 -
Vifa2g01305 354 SUPERFAMILY L30e-like 192 325 IPR029064 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A/RS6 family signature 243 256 IPR018492 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A/RS6 family signature 259 269 IPR018492 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A/RS6 family signature 224 238 IPR018492 -
Vifa2g01305 354 PRINTS Ribosomal protein L7A/RS6 family signature 269 283 IPR018492 -
Vifa2g01305 354 Coils Coil 78 98 - -
Vifa2g01305 354 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 182 337 - -
Vifa2g01305 354 ProSitePatterns Ribosomal protein L7Ae signature. 262 279 IPR004037 GO:0042254|GO:1990904
Vifa2g01305 354 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 212 301 IPR004038 -
Vifa2g01305 354 Gene3D - 176 348 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01305 Vifa-Chr2 352806193 352809117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01305 178 354 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 82.486 4.24e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01305 K02936 - fve:101294198 311.612