Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01300 ATGTCTGAAAACGGTGAAGAGAAATTACTCGCTGTGGCGCGCCACATAGCAAAAACGCTAGGCCACAACAACAACATCATGGCCGATGATATCCTCCAAATATTCTCCAACTTCGACGGTAGATTCTCCAAGGAGAAACTATCCAACGAAGGTGCAGGGAATGATTCCCTACGCTGCGCTGCACTTGAACAAACTATTAACTCTCTCCACCGTCGGATTTCTCATCATCTTTCATCGGAAGATTTTATCTGCTATAACTCCGCCGCGTTTCTCGCCGCCGTTGACGAGCTTGTTTCTACTATTGAAGACTGGAGTCCTCTCTCCGATGATAAAACCGTCGGCGCGTGTCTTATACGCGCCGATGATATACTCCAGCAAGCTATGTTCCGTGCGGAGCAAGAGTTTCGAACACTTATGGAACTCGGAGGTGAGTCGTTTGACCTGTCTCGGAGTAAAGAAAAGTCAACTCTGTATGACTTGAACGGCGAAGAGGAGGAGAATGAAGAAGAAGTTGACGGCGAAGATGACGTGATTCCGGTGGCGAAGGCGGTTGTTGATTACAACGTGGTGATAGACGCGCTTCCGCCGGCGACGTTGAACGGACTGAGAGAAATCGCGAAACGGATGTTGGCGGCGGGGTTTGGGAAGGAGTGTTCGCACGTGTATGGAGTTTGCAGGAGGGAGTTCTTGGAGGAGAGTTTGTCGAGGTTAGGGTTACAGAAACTGAGTATCTCAGAGGTTCATAAGATGCCATGGCAGGAGCTTGAAGACGAGATTGAACGATGGATTAAAGCGTCTAACGTTGCTCTTAAAATCCTCTTTCCGAGTGAGCGGCGTCTCGGTGACCGTGTTTTCTCCGGTTTGTCTTCTTCGTCAGCTGTCGCGGATCTGTCTTTCATGGAGGTCTGTCGTGGATCAGCGATTCAGTTGCTGAATTTTGCAGATGCTGTGGCCATTGGTAGTCGCACACCGGAGCGGTTGTTTAGAGTCCTCGACGTGTTTGAGACATTGCGTGACCTGATTCCGGAGTTTGAAGCATTGTTCTCTGATCAGTATTGCTTGTTTCTTGTTAATGAAGCTATCACAATTTGGAAGAGGTTAGGAGAAACTATAAGAGGGATTTTCGCGGAACTTGAGAATTTGATTAGCCGTGATCCTGTGAAGGCGGTTGTTCCCGGTGGTGGTCTTCATCCCATCACTCGTTATGTGATGAACTACCTTCGCGCTGTGTGTCGTTCGCATCAAACCCTAGAGCTTGTTTTTAAAGACAATGCACTTTCTTTGAAGGATTACGCTAAGGATGATGATAGGTTGCAATCAAATTCTCCGTTTTCGGTTCAAATTTCATGGATTATGGACTTGTTGGAACGAAATTTGGATGCGAAGTCTAAACTTTACAAAGACCCTGCTTTGTGCTCTGTTTTTATGATGAATAATGGGAGATATATTGTTAAGAAGGCTAAAGACAGTGAATTGGGAACACTTTTGGGTGACGATTGGATAAGAAAACACAGTACAAAAGTGCGACAATGCTATTTGAACTATCAAAGAAGCTCGTGGAACAAGTTGTTAGGATTTTTGAAGGTGGAGACAATGGCTGCAAAGCCCATGAAGGAGAAACTAAAGATGTTCAATCTTCATTTTGAAGAGATATGCCGGGTTCAATCTCAGTGGTTTGTCTTTGATGAGCAACTCAGGGAAGAGTTAAGGATCTCGGTCGAAAAGCTCTTGTTGCCTGCTTATGGAAGCTTTATTGGAAGGTTTCAAATTATTCCGGAGTTTGCTAAGAATGGTGATAAGTATATCAAGTTTGGAATGGAGGACATTGAAGACAGGCTTAACAATTTGTTTCAGGGAAGCAGTGGATCAAATGGTGGCCGAAAGTGA 1887 0.4542 MSENGEEKLLAVARHIAKTLGHNNNIMADDILQIFSNFDGRFSKEKLSNEGAGNDSLRCAALEQTINSLHRRISHHLSSEDFICYNSAAFLAAVDELVSTIEDWSPLSDDKTVGACLIRADDILQQAMFRAEQEFRTLMELGGESFDLSRSKEKSTLYDLNGEEEENEEEVDGEDDVIPVAKAVVDYNVVIDALPPATLNGLREIAKRMLAAGFGKECSHVYGVCRREFLEESLSRLGLQKLSISEVHKMPWQELEDEIERWIKASNVALKILFPSERRLGDRVFSGLSSSSAVADLSFMEVCRGSAIQLLNFADAVAIGSRTPERLFRVLDVFETLRDLIPEFEALFSDQYCLFLVNEAITIWKRLGETIRGIFAELENLISRDPVKAVVPGGGLHPITRYVMNYLRAVCRSHQTLELVFKDNALSLKDYAKDDDRLQSNSPFSVQISWIMDLLERNLDAKSKLYKDPALCSVFMMNNGRYIVKKAKDSELGTLLGDDWIRKHSTKVRQCYLNYQRSSWNKLLGFLKVETMAAKPMKEKLKMFNLHFEEICRVQSQWFVFDEQLREELRISVEKLLLPAYGSFIGRFQIIPEFAKNGDKYIKFGMEDIEDRLNNLFQGSSGSNGGRK 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01300 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 619 IPR004140 GO:0000145|GO:0006887
Vifa2g01300 628 SUPERFAMILY Cullin repeat-like 86 617 IPR016159 -
Vifa2g01300 628 Gene3D Exocyst complex component Exo70 78 626 - -
Vifa2g01300 628 FunFam Exocyst subunit Exo70 family protein 80 624 - -
Vifa2g01300 628 Pfam Exo70 exocyst complex subunit 260 614 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01300 Vifa-Chr2 350989912 350991798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01300 1 628 EXO70 exocyst subunit family AT5G58430 65.523 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01300 K07195 - csav:115721257 845.884