Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01294 ATGTTTCATGCTATTTTTCTTGTCCTTTCCAGACTTTATGATTTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCATATGTGTATCCGCGTCTTCACTCGTGAAGGAAATGATCTGGTAGCCACTCAGAAGATCTCTCTTGCAGAAGCATTATCCGGCTGCACAGTGAATCTCACGACACTTGATGGTAGAAACTTGACTATAATCGTCAACAATGTCGTTCATCCTGAGTATGAGGAAGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACATCAAATTCCCACCTCGGCTCAATGCAGATCAGAAATCGGGATTGAAGAAAGTCTTGGCTGCATAA 819 0.4347 MFHAIFLVLSRLYDLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACHMCIRVFTREGNDLVATQKISLAEALSGCTVNLTTLDGRNLTIIVNNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNIKFPPRLNADQKSGLKKVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01294 272 FunFam DnaJ subfamily B member 13 176 256 - -
Vifa2g01294 272 Gene3D - 150 177 - -
Vifa2g01294 272 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 178 270 - -
Vifa2g01294 272 SUPERFAMILY Ran binding protein zinc finger-like 152 175 IPR036443 -
Vifa2g01294 272 Gene3D - 178 255 - -
Vifa2g01294 272 Pfam DnaJ C terminal domain 178 255 IPR002939 -
Vifa2g01294 272 SUPERFAMILY HSP40/DnaJ peptide-binding domain 178 264 IPR008971 GO:0006457|GO:0051082
Vifa2g01294 272 ProSitePatterns Zinc finger RanBP2-type signature. 156 175 IPR001876 -
Vifa2g01294 272 MobiDBLite consensus disorder prediction 116 145 - -
Vifa2g01294 272 Gene3D - 5 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01294 Vifa-Chr2 349964705 349966408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01294 16 154 C3H Transcription Factor Family AT2G31510 75.540 3.08e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01294 K11968 - vum:124843329 263.077