Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01292 ATGACCTCCTCTTTCTTCTCCGACCTCCTTAATTCCCCCACAGACAGAGACAACCTCAGAAACACCGAAAGATCTTACCATCATCATCGTCATGATAATGTTTTGTTGGATCAAAACGGGTCCGGTTTACCAAAATTCAAATCCACACCTCCTCCATCACTTCCTCTCTCTCCCACACCTCTCTTCTCTCCTTCTTACTTCTCTATCCCTCATGGCTTCTCCCTTTCTGAGCTTCTTGACTCTCCTGTTCTTCTCAACTCTTCTCATATTTTACCATCTCCAACAACTGGATCATTTGCTAATAACCAAAGCTTAAACCGGAAGAATAACTATGGTGAAAAACCGCAAATTTTCAAGTCAGAAGATGAAACCTTCTCAAATTTCTCCTCCTTCCAACCTCAACCTATGCTTCAAACTTCAACAACCAACCCAGCTCAAAACGGATGGGATTTTCAAGAAACAACAAAACAAGATGGCTTAATGTGTTCTGGAATGAATATGAGTATGGTGAAAACAGAAAACTCTTCATCAATTCAAAGTTTCACACAAGAGAATCACATGAGAGATTATAGCAACTATCAAACTCAGCCACAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAGTATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTACTATAAATGCACATACCCAAATTGTCCAACAAAGAAAAAAGTTGAAAGAGCTTTAGATGGACAAGTTACTGAAATTGTTTATAAAGGTAATCATAATCATCCTAAGCCTGTGGCTAACAAGAGGAACATGAATTCAATGTCTTCCTCTTCGTCGTCACTTGTGAATCCTCCTTCAAATCAATATGGAAATGACATGCAAATGGTATTGGTTGCCACACCGGAGAATTCTTCAATATCCGTTGGAGACGATGAATATGAACAAAGTTCTCATAAATCGGGTGGAGATCATGAGTTTTGTGACGATGATCAACCCGATGCCAAAAAATGGAGAATTGAAGGTGAAAATGAGGGGATATCATCAGGAATTGGAAATAGAACAGTGAGGGAACCTAGAGTTGTGGTTCAAACAACTAGTGACATTGATATTCTAATTGATGGGTATAGATGGAGAAAATATGGACAAAAAGTAGTAAAGGGAAACCCAAATCCAAGGAGTTACTACAAGTGCACAAACCCTGGATGTCAAGTAAGAAAACATGTGGAAAGAGCTTCACAAGACCTAAGATCAGTGATAACAACCTATGAAGGAAAACACAACCATGATGTTCCTGCACCACGTGGAAGTGGAAACCACTCTATCAACAAACCAATACCTAATATACCAACTATGAACAACACCATAAGTTCCAACAACAATGGATTCTTCAACCATGAGATGCTGCAGAATAACGGATTTCCAATGGATTCTTATGTGAATATGAATCAGCAACGTGTGGATAATGTTGTTAGAGGTAGAGCCAAGGAGGAGCCTGTAGTAGAAGATGACTCGTTTTTTGATTCTTTGCTATCTTGA 1545 0.389 MTSSFFSDLLNSPTDRDNLRNTERSYHHHRHDNVLLDQNGSGLPKFKSTPPPSLPLSPTPLFSPSYFSIPHGFSLSELLDSPVLLNSSHILPSPTTGSFANNQSLNRKNNYGEKPQIFKSEDETFSNFSSFQPQPMLQTSTTNPAQNGWDFQETTKQDGLMCSGMNMSMVKTENSSSIQSFTQENHMRDYSNYQTQPQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERALDGQVTEIVYKGNHNHPKPVANKRNMNSMSSSSSSLVNPPSNQYGNDMQMVLVATPENSSISVGDDEYEQSSHKSGGDHEFCDDDQPDAKKWRIEGENEGISSGIGNRTVREPRVVVQTTSDIDILIDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCQVRKHVERASQDLRSVITTYEGKHNHDVPAPRGSGNHSINKPIPNIPTMNNTISSNNNGFFNHEMLQNNGFPMDSYVNMNQQRVDNVVRGRAKEEPVVEDDSFFDSLLS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01292 514 MobiDBLite consensus disorder prediction 315 334 - -
Vifa2g01292 514 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 FunFam WRKY transcription factor 33 361 427 - -
Vifa2g01292 514 Gene3D WRKY domain 193 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 MobiDBLite consensus disorder prediction 268 291 - -
Vifa2g01292 514 Gene3D WRKY domain 361 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 Pfam WRKY DNA -binding domain 209 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 Pfam WRKY DNA -binding domain 376 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 SUPERFAMILY WRKY DNA-binding domain 366 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 SUPERFAMILY WRKY DNA-binding domain 207 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 ProSiteProfiles WRKY domain profile. 209 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 MobiDBLite consensus disorder prediction 17 35 - -
Vifa2g01292 514 MobiDBLite consensus disorder prediction 260 291 - -
Vifa2g01292 514 MobiDBLite consensus disorder prediction 1 16 - -
Vifa2g01292 514 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 SMART WRKY_cls 208 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01292 514 MobiDBLite consensus disorder prediction 307 334 - -
Vifa2g01292 514 MobiDBLite consensus disorder prediction 1 57 - -
Vifa2g01292 514 FunFam WRKY transcription factor 196 268 - -
Vifa2g01292 514 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 459 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01292 Vifa-Chr2 349588866 349591619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01292 43 513 WRKY Transcription Factor Family AT2G38470 43.907 4.07e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g01292 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01292 K13424 - gmx:100127421 548.51