LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g01285	ATGGGGACTCAAACTCAGTCAAGAGATACCCCTCTCAATCTCATTCTCATCAACCAAGGAGCTGAAGCTAGAGTTTTTGAGTCTTCTTTTGTGGGAAGAAGGTCTGTTGTCAAGGAGCGATTCTCAAAGAAGTACAGACATCCAATTTTGGATTCTAAGTTGACACTCAAGCGCTTAAATGCAGAAGCAAGATGTACAACCAAAGCAAGGCGACTTGGGGTTTGTACACCTGTACTGTATGCCGTGGATCCTGTGTCGCACACTTTAACATTTGAATTTGTTGACGGACCTTCAGTCAAGGATGTATTTCTTGAATTCGGATCATGTGGTGTCAATGTAGAGCGGCTTGACAAGATTGCGTCTCAAATTGGCCATGTAATTGCAAAGTTACATGATGGTGGTCTTGTTCACGGTGATTTAACAACATCGAACATGTTACTAAAGAATGATACCGATCAGTTGGTTCTTATTGACTTTGGATTGAGCTTCACTTCAACTCTACCAGAAGATAAAGCTGTAGATTTGTATGTCCTGGAAAGAGCCCTTGTTTCAATGCATTCTTCATGTGGTAACATTATTGATCGGATTCTTGCTGCTTACCGCAAGTCATCGAAGCAGTGGTCGTCCACAATGAACAAGTTGGCAGATGTGCGACAAAGAGGACGAAAGAGAACCATGGTTGGATGA	687	0.4236	MGTQTQSRDTPLNLILINQGAEARVFESSFVGRRSVVKERFSKKYRHPILDSKLTLKRLNAEARCTTKARRLGVCTPVLYAVDPVSHTLTFEFVDGPSVKDVFLEFGSCGVNVERLDKIASQIGHVIAKLHDGGLVHGDLTTSNMLLKNDTDQLVLIDFGLSFTSTLPEDKAVDLYVLERALVSMHSSCGNIIDRILAAYRKSSKQWSSTMNKLADVRQRGRKRTMVG	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g01285	228	Gene3D	Transferase(Phosphotransferase) domain 1	111	225	-	-
	Vifa2g01285	228	ProSiteProfiles	Protein kinase domain profile.	11	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01285	228	FunFam	Protein kinase superfamily protein	109	225	-	-
	Vifa2g01285	228	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	13	228	IPR022495	GO:0004674
	Vifa2g01285	228	SMART	serkin_6	11	227	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01285	228	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	135	147	IPR008266	GO:0004672\|GO:0006468
	Vifa2g01285	228	FunFam	TP53-regulating kinase isoform X1	22	94	-	-
	Vifa2g01285	228	SUPERFAMILY	Protein kinase-like (PK-like)	16	176	IPR011009	-
	Vifa2g01285	228	Pfam	Protein kinase domain	55	164	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01285	228	NCBIfam	KEOPS complex kinase/ATPase Bud32	20	222	IPR022495	GO:0004674
	Vifa2g01285	228	Gene3D	Phosphorylase Kinase; domain 1	22	94	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g01285	Vifa-Chr2	348588629	348590155	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vifa2g01285		Pkinase	6.9e-10	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g01285	K08851		-	gmx:100782376	373.244