Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01272 ATGGATAATGATATGGAACCGAATGTGTTAATGGAACGATACGAGTTGGGAAGATTGCTTGGCCAGGGGACGTTTGGGAAGGTTTACTATGCGCGGAGTAAGGTGACTAATCAGAGTGTCGCGATTAAAGCGATCGAGAAAAATAAGGTTGTGAAGACTGGTTTAGTTGATCGAATCAAGCGTGAGATATCGGTTATGAAATTGGCTAGACATCCCAATATTATACAACTTTTTGAGGTTATGGCGACGAAGACTAAGATTTACTTTGTTATGGAGTATGCTAAAGGTGGTGAGCTTTTCAACAAGGTTTCTAAAGGTAAACTGAAAGAAGAAGTTGCGCACAGATATTTTAAGCAGTTAATAAACGCGGTTGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAATATTCTATTGGATGAAAATGGGAATCTAAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAGTCAAATCAACAGGATAGTATGCTCCGTACACCTTGTGGCACACCGGCCTATGTTGCCCCTGAAGTCATCAAGAGAAAAGGGTATGACGGTGCGAAAGCCGATATTTGGTCTTGTGGAATAGTTCTATTTGTTTTATTGGCAGGCTATCTCCCTTTTCATGACTCGAATCTGATTGAGATGTATAGGAAGATAGGAAGAGGAGAAATAAAATATCCTAGTTGGTTTCGGCCTGAAGTTTGCAAGCTATTAGACGGTATATTGAATCCGAAACCCGATACTAGGATTTCCATAGCGGAGATTAAGGAACATTCTTGGTTTAAAAATGAACCAAATGCTAGAAATAAAAAACCACAAGTGGAAAACAGCACTCTTTCTGTTTCTTCTTCCAGTACAGTTTTGTCTGATCAAAACGATGAAAACGACGGTCCAGAAGCAGAAGACACAAAGGAAGTGCCGTTTGTGCCAACCAGTATAAATGCATTTGATATCATTTCCCTTTCGGTTGGCTTTGATCTTTCTAGATTCTTTAAAGACGATGTTCAGAAAAAAGAAGCAAGATTTAGTTCGAAACTACCTGCATCAGTCATCATCTCGAAGATGGGAGACATTGTTAAGCAACTGGGGATGACAATAAAGAAAAAAGGTGCTGGTTTGTTGAAATTGGAGGGATTGAATGAAGGTAGGAAAGGGGTTTTATCGATTGACGCGGAGATCTTCGAGGTCACTCCGAATTTCCATTTAGTCGAGGTGAAAAAATCAAACGGAGATACATTGGAATATCAGAAAATTTTGAAAGAGGATATTAGGCCTGCTCTTCAGGATATTGTTTGGGTGTGGCAAAGTGACCAACCACTGCAATCTCCACAATCAGATCAACAACTACAGATACATGACCAGCAGCAATAA 1392 0.3987 MDNDMEPNVLMERYELGRLLGQGTFGKVYYARSKVTNQSVAIKAIEKNKVVKTGLVDRIKREISVMKLARHPNIIQLFEVMATKTKIYFVMEYAKGGELFNKVSKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESNQQDSMLRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKIGRGEIKYPSWFRPEVCKLLDGILNPKPDTRISIAEIKEHSWFKNEPNARNKKPQVENSTLSVSSSSTVLSDQNDENDGPEAEDTKEVPFVPTSINAFDIISLSVGFDLSRFFKDDVQKKEARFSSKLPASVIISKMGDIVKQLGMTIKKKGAGLLKLEGLNEGRKGVLSIDAEIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQPLQSPQSDQQLQIHDQQQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01272 463 Pfam Protein kinase domain 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01272 463 CDD CIPK_C 321 435 - -
Vifa2g01272 463 ProSiteProfiles Protein kinase domain profile. 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01272 463 FunFam Non-specific serine/threonine protein kinase 5 93 - -
Vifa2g01272 463 MobiDBLite consensus disorder prediction 271 312 - -
Vifa2g01272 463 SMART serkin_6 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01272 463 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vifa2g01272 463 Gene3D Transferase(Phosphotransferase) domain 1 5 316 - -
Vifa2g01272 463 Pfam NAF domain 317 375 IPR004041 GO:0007165
Vifa2g01272 463 FunFam Non-specific serine/threonine protein kinase 316 439 - -
Vifa2g01272 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 434 - -
Vifa2g01272 463 FunFam Non-specific serine/threonine protein kinase 8 312 - -
Vifa2g01272 463 MobiDBLite consensus disorder prediction 277 300 - -
Vifa2g01272 463 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Vifa2g01272 463 Gene3D Kinase associated domain 1, KA1 317 440 - -
Vifa2g01272 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vifa2g01272 463 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01272 Vifa-Chr2 342529770 342531161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01272 1 445 CBL-interacting serine-threonine protein kinases AT5G58380 63.877 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa2g01272 Pkinase 1.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01272 - K07198 gmx:100790905 671.774