Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01255 ATGCCGGAGATCGAACACGCGCCGGAAGTAATAGCCCTTTTTGGGAAATACGATTTGGGAAGAGTCGTGGGTTGCGGCGCGTTCGCCAAAGTTCACTACGCGCGCAATATTCAAACGGGACAAGGCGTAGCCGTTAAGATAATCAACAAAAAGAAACTCTCCGGCACCGGTCTCACCGGAAACGTGAAACGCGAAATCACGATCATGAGTCGTCTTCATCACCCTCACATCGTTCGTCTTCACGAAGTTTTAGCCACGAAAACAAAAATCTACTTCATCATGGATTTCGTTCGTGGTGGTGAGCTTTTCGCGAAGATCTCAAAGGGGAGATTCAGTGAAGATCTCAGCCGTCGGTATTTTCATCAGTTAATCTCCGCCGTTGGATATTGTCACTCGCGTGGTGTTTTTCATCGTGATCTTAAACCGGAGAATCTTCTGTTGGATGAGAATGGGAAATTAAAGGTTTCGGATTTCGGGTTAAGTGCGGTGACGGATCAGATCCGACCCGATGGGTTGCTTCATACGCTTTGTGGGACACCGGCTTACGTGGCACCGGAGATTCTCGCTAAGAGAGGATATGATGGAGCTAAGGTTGATGTTTGGTCGTGTGGTGTTGTTTTGTTTGTTCTTGCTGCTGGGTATCTTCCGTTTAATGATCAGAATTTGATGGTGATGTATAGGAAAATCTATAAAGGTGAATTCCGGTGTCCGCGATGGATGTCACCGGATCTTCGAAGATTTTTATCGAAATTGCTGGATACGAACCCGGAAACCCGGATCACGGTCGAAGAAATGACCCGGGATCCGTGGTTTAGAAAAGGGTATAAGGAAATTAAGTTTCATGAAGAGGATTATGGGTCGGATCATGGGCATGGAGTTGGGATCGGGTGTAAGGGTGATGGGTCGGAGGTGTTGAATTTGAATGCTTTTGATATCATATCGTTTTCATCGGGTTTGGATTTATCCGGGTTGTTTGGGGAATTTGATGGGGCGGAGAGGTTTGTTTTAAGGGAGTTGCCGGAGAGGATAATTGATGTTGTGGAGGAAGTTGGAGCGGCGGAGGGAATGGGAGTGAGGTGGAAGAAGGAATGTGGGGTTGAGTTGGAAGGGTTGAATGGTAATTTCGGAATTGAGATTGAGGTTTACCGGCTAACGGCGGAGGTGGCGATGGTTGAGGTTAGGAGGAGAGGATGTGATGCGGCGGCGTTTAGTGATTTGTGGGATGTTAAGCTTAAGCCTCAGTTGCTTTCAGGTGGTGCAACGACGTCGTATCAGCTTGAAAGTGAACCTGAATCACCGATTGCCTGTGACTGA 1314 0.4756 MPEIEHAPEVIALFGKYDLGRVVGCGAFAKVHYARNIQTGQGVAVKIINKKKLSGTGLTGNVKREITIMSRLHHPHIVRLHEVLATKTKIYFIMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGKLKVSDFGLSAVTDQIRPDGLLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGVVLFVLAAGYLPFNDQNLMVMYRKIYKGEFRCPRWMSPDLRRFLSKLLDTNPETRITVEEMTRDPWFRKGYKEIKFHEEDYGSDHGHGVGIGCKGDGSEVLNLNAFDIISFSSGLDLSGLFGEFDGAERFVLRELPERIIDVVEEVGAAEGMGVRWKKECGVELEGLNGNFGIEIEVYRLTAEVAMVEVRRRGCDAAAFSDLWDVKLKPQLLSGGATTSYQLESEPESPIACD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01255 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 399 - -
Vifa2g01255 437 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vifa2g01255 437 CDD CIPK_C 308 415 - -
Vifa2g01255 437 Pfam Protein kinase domain 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01255 437 Pfam NAF domain 306 359 IPR004041 GO:0007165
Vifa2g01255 437 FunFam Aurora kinase A 11 100 - -
Vifa2g01255 437 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Vifa2g01255 437 Gene3D Kinase associated domain 1, KA1 303 417 - -
Vifa2g01255 437 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01255 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vifa2g01255 437 FunFam Non-specific serine/threonine protein kinase 8 293 - -
Vifa2g01255 437 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01255 437 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Vifa2g01255 437 Gene3D Transferase(Phosphotransferase) domain 1 9 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01255 Vifa-Chr2 339911575 339912888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01255 1 423 CBL-interacting serine-threonine protein kinases AT2G30360 62.156 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa2g01255 Pkinase 5.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01255 - - gsj:114377188 677.937