Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01253 ATGTCTTGCTCCGTTGTGGTTTCAAATTCTAATGTCTTCTCTCTCCCCTCTCCTTGCCATTTCTCTCTCTCCTCTCCTGTTTTGAAGAGAAAGAGGCCGGCTAAGCTTCATATACCTGTTGCTTCTCAAACTATTGAAGTCCCACCGACTGTAAAGACTCCGGCACCAGAAAAGGATGCTGTTGAGGTGGAGGGAAATGGATTTTCCGTGTATTGTAAGAGAGGAAGTAGGAAACATATGGAGGATCGTTATTCTGCTTCTTCTGATGACCTTCATGAAGAAACAAAACAGGCTTTTTTTGGCATATTTGATGGGCATGGAGGTGCAAAAGCTTCGGAATTCGCAGCAGATAACATGGAGAAGAATGTGTTAGAAGAAATAATGAGAAGAGGGGAGAGTGATATTGAGGGTGCTGTGAAACATGGCTATCTCAAAGCTGATTCAGATTTCTTAAAAGAGGATCTTCACGGTGGTTCTTGCTGTGTAACAGCATTGATAAGGAACGGTAATCTTATCGTGTCCAACGCGGGCGATTGTCGTGCTGTTATCAGTCAGGGAGGTGTTGCTGAGGCCTTAACATCTGATCACAAACCTTCAAGAAAAGATGAAAAGGAAAGGATTGAGACTCAGGGTGGCTATGTTGATATGTGCCGGGGCGTGTGGAGAATACAAGGATCTCTTGCTGTTTCCAGGAGCATTGGAGATAGACACATGAAACAATGGGTTATAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTCATCATGACTTGTTAATCCTAGCTTCAGATGGATTATGGGACAAGGTTAGTAATCAGGAAGCAGTAGATATAGCTCGTCCTTTCTGTGCAGGGAACAATAAACAAGGACCCCTTCAAGCTTGTAAGAAACTTGTCGAATTATCAGCGTCACGAGGCTCTATCGATGATACAAGTGTTATGATCATCAAATTACAGAAATATATTTGA 972 0.428 MSCSVVVSNSNVFSLPSPCHFSLSSPVLKRKRPAKLHIPVASQTIEVPPTVKTPAPEKDAVEVEGNGFSVYCKRGSRKHMEDRYSASSDDLHEETKQAFFGIFDGHGGAKASEFAADNMEKNVLEEIMRRGESDIEGAVKHGYLKADSDFLKEDLHGGSCCVTALIRNGNLIVSNAGDCRAVISQGGVAEALTSDHKPSRKDEKERIETQGGYVDMCRGVWRIQGSLAVSRSIGDRHMKQWVIAEPETKVLRIEPHHDLLILASDGLWDKVSNQEAVDIARPFCAGNNKQGPLQACKKLVELSASRGSIDDTSVMIIKLQKYI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01253 323 Pfam Protein phosphatase 2C 68 311 IPR001932 -
Vifa2g01253 323 Gene3D - 66 322 IPR036457 -
Vifa2g01253 323 SMART PP2C_SIG_2 79 319 IPR001932 -
Vifa2g01253 323 SMART PP2C_4 60 317 IPR001932 -
Vifa2g01253 323 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Vifa2g01253 323 ProSiteProfiles PPM-type phosphatase domain profile. 67 319 IPR001932 -
Vifa2g01253 323 SUPERFAMILY PP2C-like 67 320 IPR036457 -
Vifa2g01253 323 PANTHER PROTEIN PHOSPHATASE 2C 58 318 IPR015655 GO:0004722|GO:0006470
Vifa2g01253 323 CDD PP2Cc 66 319 IPR001932 -
Vifa2g01253 323 FunFam probable protein phosphatase 2C 25 60 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01253 Vifa-Chr2 339671287 339672492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01253 27 319 PP2C-type Phosphatase Gene Family AT1G07160 65.993 2.51e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01253 K17506 - gmx:100818903 485.337