Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01249 ATGTTGTCTGAAACTGAATACTGCCCGGAAGCTGTTCGCCAATATGCACTTGCTTCTTCTCACAACAGGAAGACTTTGAAGGAAAGAGTATGGAAGCATCTTGTATATCTTGGATGGCAAATTCACCAAAATGGTAATCATCTCAGGTACACGCCACCCCATGGAATCTTGTGTCGCAAGAAATTTTACTACTCACTTATTGAGATTTGTAAAGCTATGCAAATGGAATCTTTTTCTGTTGCAATGTCACATTGTCCTCAAGCCATTGTTGAATACCACAAACATGCACTCGACCCGAATTGGGGTGATAAAAGAGAACTTATTTCGAAAATAAGAAAGCATCTCGTGAAAGACGGATGGGTTTTAACTGACCCGCCCCTCGAAAACAGAAGAAGGGGTGTGTTATATACTTCTCCGCAAAACCGGAAATTTAGCTCACTCAACACGGTATGCAAATTCCTAATTGAGGAAAGTGTTAGAAGATCGTCTATTTCTGGCATTCAACCGTTAAATGCCTCCTCGGTTGTTAGCGAAGAAAGTGTTGATCAGGAAAGTATTCAAAGATCAACTATGTCTGGCGTTCAACCTTTTGTTAGTGATGAAAGTGTTGATTGGGTATCAAGTGATGATGACTTATCAAGTAAAGCATCAAATTTGCTTTCTCGTGAGACCGAGTTATACACTATAGACAGGGTTGCTGCAAATAGATCAAAGCAAAAACGTGATGAATCAAGATCTCTAGCTGCAGTGCCTTCTTCTGTTGCAGTGGAGGGAGAACAAGCTACTCCTTCTGTAGTGTATTGTCCTCAAGCCGTTGTTGACTATCATAAACATGCATTCGAGCCGAACTGGCGTGATAAAAAAGAATTTATTTCGAAAATAAGAAAGCATCTCTTGAAAGAAGGATGGGTTTTAACTGACCCGCCACTGGAAAACAGAAGAAGGGGTGTGTTATATACTTCTCCGCAAAATCAGAAATTTAAGTCACTAAACATGGTATGCAAATTCCTAATTGAGGAAAGTATTAGAAGATCATCGGTTTCTGGCATTGAACCTTTAAATGCCTCAGTTGTTAACGAAGAAAGTGTTGATCAGGAAAGTATTCCAAAATCACCTATGTATGGCATTCAACCATTTGTTAGTGATGAAAATGTTGATCGGTTACCAAGTGATGATGACTTATCAAGTAAAGCATCACATTCGCTTCCTCGTGAGACCGAGTTACACACTATAGACAGGGTTATTACAAAGAGATCAAAGCGAAAATGCGATGAATCAAGTCTAAGAGTGAGATCAAATAAAAGAGTGCGAAATGTTTCTGTCCCTTCTCTATCACATCAGAAAGTTCTGAATGTTGTGTCTTGGTTGATAGACAGCAAAGTGGTGTTACCAAGGTCTAATGTTTGTTATGTAGCAAAAAGACTGCGTGTCATGGCTTCAGGTCGAATAACTCACTATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCCTTCGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCGCTCTTACAGTGCCAGATACAAATAATGCAAGATCATGTGCCAAGGGATGCTATGGTAAAATCACAGAGTGATCTGTGTCAGACTGAAAACGACTACATTTGTTCCGTTTGCCGCAACGAGGGCGAACTTCTTTTGTGTGATCGGTGCCTGTCTTCATATCATAAGAGGTGTCTTGGTCTGGAGGACGTCCCTGATGGTGATTGGTTTTGTCCATCATGTCTTTGCGGGATTTGTGGCCAAAGAAAATTCAATGGGGGTGGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAAATATCATGTTGCATGCCTGCTAAGTAGAGATACAAGTAAGTCCAGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATATGAAGGCCTTCAAAGACTGTTGGGAGAGCCAGTTTCAGTGGGCGTGGACGATCTAACATGGACATTGGTGAAGTGTATCGACTCCGAGAGTTGTGATTTTGATAGTAGTAAAAGTGGATTATTGGCAGAAACTTACAGCAAACTCAATGTTGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCCTCCTCTGGAAGAGATCTAGTGGAAGATGTTATATTCAGCAGATGGTCAGAACTTAATCGAATGAATTTCCAAGGTTTCTATACTGTACTTCTAGAGAAAGATGAAGAGCTGGTCAGTGTGGCAACTATTAGGATCTTTGGAGATAAGGTGGCTGAAGTACCTCTCGTTGGTACCAGATTTCAATATCGCCGACATGGAATGTGCCGCATCTTAATGGATGAACTGGAAAAGAAACTCATGCAATTAGGAGTGAAGCATCTTGTTTTGCCTGCTCTTCCCACTGTGGTAGATACATGGACCGGTCCTTTTGGCTTTTCAAAGATGACAGAACTTGAGAGGTCAAAATTTCTTGACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTGTTGACTAAGACGCCATCTCCAGATTCTGTTTTGCCAATAGAGTTCCAACAAAAAGTTGGTGCTATCTCGGAAAGCAGTAGTGCTAATAAGTCTCCAGTATCTGAAGTTTACCAAGCAGGAGAAATAGTTATGAAAGAAACGTCCGACACACCAATGTTGAATGTTTTTGAAGGCGGAAGCGATGATGATAATGTATCTAACGAACCTGTTATTGACTGTGTCACCATGGCGGAGGAGCAACCAGTTCTTGAGGATGAACAACATTACCAGAATGGAACCTCCACTGTACAAGGCTCTTGTGAAAAATGGAAGAATGTCCTGAAATATTGTAGACGAAGGAAAGTGAAAGGGTAG 2919 0.4084 MLSETEYCPEAVRQYALASSHNRKTLKERVWKHLVYLGWQIHQNGNHLRYTPPHGILCRKKFYYSLIEICKAMQMESFSVAMSHCPQAIVEYHKHALDPNWGDKRELISKIRKHLVKDGWVLTDPPLENRRRGVLYTSPQNRKFSSLNTVCKFLIEESVRRSSISGIQPLNASSVVSEESVDQESIQRSTMSGVQPFVSDESVDWVSSDDDLSSKASNLLSRETELYTIDRVAANRSKQKRDESRSLAAVPSSVAVEGEQATPSVVYCPQAVVDYHKHAFEPNWRDKKEFISKIRKHLLKEGWVLTDPPLENRRRGVLYTSPQNQKFKSLNMVCKFLIEESIRRSSVSGIEPLNASVVNEESVDQESIPKSPMYGIQPFVSDENVDRLPSDDDLSSKASHSLPRETELHTIDRVITKRSKRKCDESSLRVRSNKRVRNVSVPSLSHQKVLNVVSWLIDSKVVLPRSNVCYVAKRLRVMASGRITHYGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQIQIMQDHVPRDAMVKSQSDLCQTENDYICSVCRNEGELLLCDRCLSSYHKRCLGLEDVPDGDWFCPSCLCGICGQRKFNGGGEDGHFLKCIQCEHKYHVACLLSRDTSKSRSYVESRFCGKDCEKLYEGLQRLLGEPVSVGVDDLTWTLVKCIDSESCDFDSSKSGLLAETYSKLNVALSVMHECFEPLKEPSSGRDLVEDVIFSRWSELNRMNFQGFYTVLLEKDEELVSVATIRIFGDKVAEVPLVGTRFQYRRHGMCRILMDELEKKLMQLGVKHLVLPALPTVVDTWTGPFGFSKMTELERSKFLDYTFLDFPGTIMCQKLLTKTPSPDSVLPIEFQQKVGAISESSSANKSPVSEVYQAGEIVMKETSDTPMLNVFEGGSDDDNVSNEPVIDCVTMAEEQPVLEDEQHYQNGTSTVQGSCEKWKNVLKYCRRRKVKG 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01249 972 ProSiteProfiles Zinc finger PHD-type profile. 556 601 IPR019787 -
Vifa2g01249 972 PANTHER PHD FINGER PROTEIN 12 244 930 IPR042163 GO:0003714|GO:0045892
Vifa2g01249 972 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 711 835 IPR016181 -
Vifa2g01249 972 Gene3D - 702 860 - -
Vifa2g01249 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 610 IPR013083 -
Vifa2g01249 972 CDD NAT_SF 751 811 - -
Vifa2g01249 972 SMART ring_2 600 652 IPR001841 -
Vifa2g01249 972 SMART ring_2 559 598 IPR001841 -
Vifa2g01249 972 SUPERFAMILY FYVE/PHD zinc finger 542 599 IPR011011 -
Vifa2g01249 972 Pfam PHD-finger 558 599 IPR019787 -
Vifa2g01249 972 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 695 845 IPR000182 GO:0016747
Vifa2g01249 972 Pfam Tify domain binding domain 481 532 IPR032308 -
Vifa2g01249 972 SMART PHD_3 600 654 IPR001965 -
Vifa2g01249 972 SMART PHD_3 558 599 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01249 Vifa-Chr2 338180116 338185043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01249 407 799 PHD Transcription Factor Family AT5G58610 47.619 1.10e-112 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g01249 TDBD 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01249 - - psat:127084557 1459.51