Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01248 ATGCAATTAGGAGTGAAGCAGCTTGTTTTGCCTGCTGTTCCTTGTGTGGTAGATACATGGACAGGTCCTTTTGGCTTTTCAAAGATGACAGAACTTGAGAGGTCAAAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGTTGTTGACAAAGACGCCGTCTCCAGATTCTGTTTTGCCAATAGAGTTCCAACAAAAAGTCGGTGCTATCTCCGAAAGCAGTAGCGCTAATAAGTCTCCAGTATCTGAAGTTTACCAAGCAGGAGAGATAGTTATGAAAGAAATGTCGGATACACCAATGTTAGACGCTTTTGAAGGCGAAAGCGATATTGATAATGTATCTAAAGAACCTGTTATTGACTGTGTCACCATGGTGGAGCAACCAGTTCTCGAGGATGAACAACATTGCAAGAATGGAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGAATGTCTTGTATTATTATAGACGAAGGAAAGTGAAAGGGTAG 513 0.4113 MQLGVKQLVLPAVPCVVDTWTGPFGFSKMTELERSKFLDYTFLDFQGTIMCQKLLTKTPSPDSVLPIEFQQKVGAISESSSANKSPVSEVYQAGEIVMKEMSDTPMLDAFEGESDIDNVSKEPVIDCVTMVEQPVLEDEQHCKNGTSTVQGSFEKWKNVLYYYRRRKVKG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01248 170 PANTHER PHD FINGER PROTEIN 12 2 111 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01248 Vifa-Chr2 338115179 338116382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01248 2 57 PHD Transcription Factor Family AT5G63900 55.357 5.93e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01248 - - psat:127084556 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01248 2 338115179 338116382 Vifa2g01248 2 338115179 338116382 ECH
Vifa2g01248 2 338115179 338116382 Vifa1g00848 1 144733100 144738330 PCT