Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01247 ATGGAGGGTTTAGAAGAATCCAGAAGAAGCTTTAAGCGTAAATGTGAATTCCCAAAACGAAAGCTTCAAATCAATGAAAGGGTTGAGGTGAAGAGTTTTGAGGAGGGTTTTCTGGGGTCATGGCATCCGGGTACTGTTATTGAATGTGGGAAGCTGACGCGTCATGTTCGATATGAAAATATTTTAGATGATGATGGGTTGGATTATTCTGTGGAAGTGGTGAAAGTTTCAGATGCTTTGGATTGTGAATTTGGTTCTCCCAGTAAATTTGCGGTGATTAGGCCGCTGCCTCCTTGGGTTGAGTTTCAGACATGTGATGTTAAGTTTGGTCTTTGTGTTGATGTGATTTACCGGGATGCTTGGTGGGAGGGTGTTGTGTTTGATCACTGTGAAGGAATGGAGGAGAGGAGTGTGTTTTTTCCGGACTTGGGGGATGAGATGAAGGTTGAGATTGATCAGATGCGGATTACTCGGGATTGGGATGAAGTTACGGGGGAATGGCGGAGACGGGGGAACTGGGTGTTTCTTGAATTGATTGAGGACTGTCAGAAGGAGTCGTATCTTGCTGTTTCGGTGAAGCAAATTTGGTATGAAGTGCGACAAAAAAAGGAATTCACAGTTGTTGGCGATTGGACGTTAAATGTGAAGAAGGATTTGTGGAGAGACATGATAATGCAGGTAGTTGTTGACTATATGGGTGTTACAGTAAAAGAAGTTTTCTCAACCTTGAAGCCTCAAGAGCTGGACTCGGTTGGACTAATGTCTAAAGTTGATTCAAACAAGAACTTATCCGAGAAGGAGAATTTTGAGCAGAAACAACTTGTTGTTTTTCCAGTTGAAGACGACTTTCCTAAGTTTCGAAATGAAGTTTCAGTTGCTATTTGTTCCAAGAGAAACAAACATAGATCTTCAACTCATTCAAATTCCGACAAATGGGAACCTGTAATAGTGTCTGAAACGGAATACTGCCCCGATGCTGTTAGGCAATATGTACTTGCTTATCAGAACAGGAGTAATAGGGAGTTTTTGAAGAAAAAAGTATGGAAGCATCTTACATATCTTGGATGGGAAATTTACCGATATGATCATCGCCTCAGGTACAAGCCACCCGATGGAATCTGTCTTGAGAAGAAATTTTACTACTCACTTATTGATATTTGTAAAGTTATGGAATCAAGGGTGAACTCTTCCGTTTCCAAAAATGATCTCGGTAACAATGCTCCTACTCCTTCCTCTATTAATGGTTATAATTTATCTATTTCTTCTTCTACTTCACAATCTGAACCACCCCAAACCATTAATATAAGTGCATATCTTCCTACTCAACCCACACCATGTAAACCACAAAAACTGCCTCGACCATGTCATGTTCCACATGTGCCTCTTAATCCATTGGAAAAGAGTCAGAATCTAGATGTCTCTTCTCTAGCTGTGGTGCCTTCTTCTGTTGCAGTGGCGTATTATCCTCAAGCCATTGTTGAATACCACAAACGTGCATTCGAGCCGAGTTCGGATAATAAAAGAAAACTTATTTTGAAAATAAGGAAGCATCTCGTGAACGAAGGATGGGTTTTAACTGACCCGCCACTAAAAAATAGAAGAAGGGGTGTGTTATATACTTCTCCGCAAAATCGGAAATTTAGCTCACTCAACACGGTATGCAAATTCCTAATTGAGGAAAGTGTTAGAAGATTGTCTATTTTTGGCATTCAACCTTTAAATGCCTCCTCAGTTGTTAACGAAGAAAGTGTTGATCAGGAAAATATTCAAAGATCAACTATGTATGGCATTCAACCTTTTGTTAGTGATGAAAGTGTTGATCGAGTACCAAGTGGTGATTTATCAAGTAAAACATCACATTTTCTTCCTCATCAGACTGAGTCATACACTATAGACAGGGTTGCTACAAATAGATCAAAGCGAAAATGCGATGAATCAAGTCTAAGGGTGAGGTCGAATAAAAGAGTGCGGAAATTTTCTGTCCCTTCTCTATCACATCAGAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAATGTGGTGTTACCAAGGTCTAATGTTTGTTATGTAGCAAAAAGACGGCGTGCCATGGCATCTGGTCGAATAACTCACGATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCTTTCGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCGCTCTTACAGTGCCAGATACAAATAATGCAAGATCATGTGTCAAGGGAGGCTATGGTAAAATCACAGACTCGTTTGTGTCAGAGTGAAAACGACTACATTTGTTCCGTTTGCCGCAACGGGGGCGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCATATCATAAGACATGTCTTGGTCTGGAGGACATCCCTGAGGGTGAATGGTTTTGTCCATCATGTCTTTGCAGGATTTGTGGCCAAAGAAAATTCAACGGAGGCGGTGAGGACGGACCTTTCCTTAAATGCATTCAGTGTGAACATAATTATCATGTTGCATGCCTGATAAGTAGAAATACATGTAAGTCCAAAAGTTATGCGGAAAGCCGGTTTTGCGGAAAAGACTGTGAAAAGTTATATGAAGGCCTTCAAAGAATGTTGGGAGAGCCAGTTTCAGTGGGTGTGGACGATCTAACGTGGACATTGGTGAAGTGTTTCGATTCTGAGTGTTGTGATATTGATAGTTGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTAGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCTAAAAGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTAGAGAAAGATGGAGAGCTGGTCAGTGTGGCAACTACTAGGGTCCTAGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACAAGATTTCAATATCGTCGACATGGAATGTGCCGCATCTTAATGGATGAACTGGAAAAGCGACTGACAGCGGTGCTATCCCGGAATAGCGTCCCGGAGCAGTGTCCCTCTGCTACAGAGGAGCGGATCACGTCTCAGTTTGAGACCGCGGCCGTGATTTGTGGTTTAGCGGGTCGAGGGAGCGGAGCGCTTCCCGGCCCGAGCAGGTTTCATCAGTTTTGA 3219 0.4188 MEGLEESRRSFKRKCEFPKRKLQINERVEVKSFEEGFLGSWHPGTVIECGKLTRHVRYENILDDDGLDYSVEVVKVSDALDCEFGSPSKFAVIRPLPPWVEFQTCDVKFGLCVDVIYRDAWWEGVVFDHCEGMEERSVFFPDLGDEMKVEIDQMRITRDWDEVTGEWRRRGNWVFLELIEDCQKESYLAVSVKQIWYEVRQKKEFTVVGDWTLNVKKDLWRDMIMQVVVDYMGVTVKEVFSTLKPQELDSVGLMSKVDSNKNLSEKENFEQKQLVVFPVEDDFPKFRNEVSVAICSKRNKHRSSTHSNSDKWEPVIVSETEYCPDAVRQYVLAYQNRSNREFLKKKVWKHLTYLGWEIYRYDHRLRYKPPDGICLEKKFYYSLIDICKVMESRVNSSVSKNDLGNNAPTPSSINGYNLSISSSTSQSEPPQTINISAYLPTQPTPCKPQKLPRPCHVPHVPLNPLEKSQNLDVSSLAVVPSSVAVAYYPQAIVEYHKRAFEPSSDNKRKLILKIRKHLVNEGWVLTDPPLKNRRRGVLYTSPQNRKFSSLNTVCKFLIEESVRRLSIFGIQPLNASSVVNEESVDQENIQRSTMYGIQPFVSDESVDRVPSGDLSSKTSHFLPHQTESYTIDRVATNRSKRKCDESSLRVRSNKRVRKFSVPSLSHQKALNVVSWLIDSNVVLPRSNVCYVAKRRRAMASGRITHDGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQIQIMQDHVSREAMVKSQTRLCQSENDYICSVCRNGGELLLCDRCPSSYHKTCLGLEDIPEGEWFCPSCLCRICGQRKFNGGGEDGPFLKCIQCEHNYHVACLISRNTCKSKSYAESRFCGKDCEKLYEGLQRMLGEPVSVGVDDLTWTLVKCFDSECCDIDSCKSGLLAESYSKLNVALSVMHECFEPLKEPSSGRDLVEDVIFSRWSELNRMNFRGFYTVLLEKDGELVSVATTRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKRLTAVLSRNSVPEQCPSATEERITSQFETAAVICGLAGRGSGALPGPSRFHQF 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01247 1072 CDD Tudor_Agenet_AtDUF_rpt1_3 22 98 - -
Vifa2g01247 1072 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 763 830 IPR013083 -
Vifa2g01247 1072 Gene3D - 925 1027 - -
Vifa2g01247 1072 SMART agenet_At_2 20 101 IPR014002 -
Vifa2g01247 1072 SMART agenet_At_2 105 162 IPR014002 -
Vifa2g01247 1072 SMART ring_2 820 861 IPR001841 -
Vifa2g01247 1072 SMART ring_2 779 818 IPR001841 -
Vifa2g01247 1072 SMART PHD_3 820 874 IPR001965 -
Vifa2g01247 1072 SMART PHD_3 778 819 IPR001965 -
Vifa2g01247 1072 Pfam PHD-finger 778 820 IPR019787 -
Vifa2g01247 1072 Pfam Tify domain binding domain 701 752 IPR032308 -
Vifa2g01247 1072 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 957 1021 IPR016181 -
Vifa2g01247 1072 SUPERFAMILY FYVE/PHD zinc finger 760 819 IPR011011 -
Vifa2g01247 1072 ProSiteProfiles Zinc finger PHD-type profile. 776 821 IPR019787 -
Vifa2g01247 1072 PANTHER PHD FINGER PROTEIN 12 434 1023 IPR042163 GO:0003714|GO:0045892
Vifa2g01247 1072 Pfam Agenet domain 26 98 IPR008395 -
Vifa2g01247 1072 CDD PHD2_CHD_II 779 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01247 Vifa-Chr2 338105928 338110728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01247 31 427 PHD Transcription Factor Family AT5G58610 32.420 2.58e-57 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g01247 Agenet 1e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01247 - - psat:127084556 1809.27