Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01231 ATGACACCATTATCTCTCCTTTTCATCTTCACCGTTTGTTTCACCATAACCACCGCCAACACCCTCGGCACAGCCTCCACAACCGCCATCACCTCCAACACCTCCACCATCTGCGGCATAGTAGCCGGGAAGCCTCACCAATACATCCAATGCTACCAAAACGGGAAACTCATTCCAATACTCCACCCCAATGTTTCGTTCCAGTCCATCTCCGGTGGGCGGAGCTTCTTCTGCGGCCTCCGTTCGAATGGCCTCAGTCTCCATTGTTGGGATACAACAACACCAACGTCTTTTCTCAAACCGAAGAGATTGTATCACAGTGAAAAGGTTCAGCTGAGTGATGTAGCTGTTGGTGATGATCATGTTTGTGCTATAGAGTTGCACTCTGGTGTGGTCAAGTGTTGGAGAGGCTATGGTGGAGTTGAGTTTCCTTCTCCTGATGAAAGCTTTCGGTTTCGAAGCGTTACTTGTGGTTATGGTTTTTGTTGTGGAATACTGAAGGTGAGTTATAGAGTTTTTTGTTGGGGTGTAAATGGAGAAAAAGGTGTTGAGAATTTGATTCAGAAACAGTTTGAGAATGTATCAATGTCAACATTGGTTTCTGGTGTTTCTCATGTTTGTGGCTTAACTGTTAATGGAGTTTTGGTTTGTAAAGGGAAGAACAATAACAATGATTCTGGTAAGTTAAATGTTCCTTTGAATTCTGGTTATGTTTTTTCAGGTCTTGCTTTAGGTGAAAACTTCACTTGTGCTATTAGAATTAAAAATGGGTTTGTTCAATGTTGGGGTGATGATTTCGATATCGATGATGATGTGAATAATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTGGATTTTGTTTGTGGTTTAACAACTAGGAATTTGTCTCTAATTTGTTGGGGTAACCCTAATTGGTATTCTAAGCCTCATTTGATTAGTGATGTTTATGTTCCATTGGGAACGATTCTTCCTAGTCCATGTGTTGTAAGTGATTCTTGTAGCTCTTGTGGTGTGTATCCAAATTCTGATTTTCTTTGTCATGGATTTGGGACTATTTGTTATCAATGTCAAACGGAGTTTCCGTTCGCCGTGCAGTTGCCACCGCCGATATCATCGCCTACGAATCAATCTTCTATTGATGATGAAGAAAAACACGAAAAAGGCTTACGGGGTTGGAAATCGATAATGTTTCTGATTATTGGATCAGTTGGTGCTTTTGCAGGATTATGTACCATTATTTATTTTCTTATGATTGGTGCAAGAAAATTGGTAAAGGCGAAAATCGACAATTCTGTTCAACCTACAAGTAGTGAATCTGATGATGCTTATGTTGGTATAGCTCCAATGCATAATAATGGAACAACAACAATATTAAGATCTTTTTCGAGCAAACGACAAAGCTCGAGTAGGTTAAGAAGTGGTTCGTCATCGAAGCAACTAGACAGAACCGAGAGTTACGCGTTTTGGGAATTAGTTTCAGCTAGTGACAATTTCTCAGTTGAAAACAAAATTGGTGCTGGTAGTTTTGGATGTGTTTACAAAGGGAGGTTACTAGACGGCCGCCAAGTCGCGATTAAAAGAGGCGATACAACGTGCGCGAAGAACACGAAGAAAAAGAAATTCCAAGAGAAAGAAACATCTTTTGATTCTGAGATAACATTGTTATCAAGGCTTCACCACAAGCATTTGGTGAGACTAATCGGTTTCTGCGAAGAGAACGACGAGAGGCTTCTGGTTTACGAGTACATGAGCAACGGATCACTTCATGATCACTTGCATGATAAGAACAATGTCGAGAAAAACAGCAGCATTATGAATTCATGGAAAATGAGAATCAAAGTTGCATTAGACGCTGCGAGAGGGATCGAGTACATTCATAACTACGCGGTTCCTCCGATTATTCATAGAGACATTAAATCCTCGAACATACTTCTCGATTCAAAATGGAACGCTAGAGTTTCGGATTTTGGATTATCGTTGATCTGGCAAGAAACCGAACTAGAACTGATGTCTGATAGGAAAGCGGTTGGAACGGTTGGTTACATAGATCCCGAGTACTATGTATTGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAGCTTTTGACAGGTAAAAGGGCAGTGTTTAAAACCGAAGACGGTTCGAGTCCTATTTGTGTTGTGGAGTATGCAGGTCCAAAGATTGGTTCAGGAGAGGTGTGGAATTTGTTGGATGATAGAGTTGGAATGCCTGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTGAATTTGGAGGGTAGAGAAAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGAGCTTTGTCTTTTCTTGAGGATAGTCCTGCTAGTTTTTCTATGTCTTCATTCTCTGCTACTCTTACATGA 2451 0.4035 MTPLSLLFIFTVCFTITTANTLGTASTTAITSNTSTICGIVAGKPHQYIQCYQNGKLIPILHPNVSFQSISGGRSFFCGLRSNGLSLHCWDTTTPTSFLKPKRLYHSEKVQLSDVAVGDDHVCAIELHSGVVKCWRGYGGVEFPSPDESFRFRSVTCGYGFCCGILKVSYRVFCWGVNGEKGVENLIQKQFENVSMSTLVSGVSHVCGLTVNGVLVCKGKNNNNDSGKLNVPLNSGYVFSGLALGENFTCAIRIKNGFVQCWGDDFDIDDDVNNHVMKGVSFESIVAGLDFVCGLTTRNLSLICWGNPNWYSKPHLISDVYVPLGTILPSPCVVSDSCSSCGVYPNSDFLCHGFGTICYQCQTEFPFAVQLPPPISSPTNQSSIDDEEKHEKGLRGWKSIMFLIIGSVGAFAGLCTIIYFLMIGARKLVKAKIDNSVQPTSSESDDAYVGIAPMHNNGTTTILRSFSSKRQSSSRLRSGSSSKQLDRTESYAFWELVSASDNFSVENKIGAGSFGCVYKGRLLDGRQVAIKRGDTTCAKNTKKKKFQEKETSFDSEITLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKNNVEKNSSIMNSWKMRIKVALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSKWNARVSDFGLSLIWQETELELMSDRKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPICVVEYAGPKIGSGEVWNLLDDRVGMPEVNEVESVEIMAYTAMHCVNLEGRERPNMVDIVANLERALSFLEDSPASFSMSSFSATLT 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01231 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vifa2g01231 816 CDD STKc_IRAK 509 794 - -
Vifa2g01231 816 SUPERFAMILY Protein kinase-like (PK-like) 481 792 IPR011009 -
Vifa2g01231 816 Gene3D Phosphorylase Kinase; domain 1 475 587 - -
Vifa2g01231 816 ProSiteProfiles Protein kinase domain profile. 503 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01231 816 FunFam receptor-like protein kinase FERONIA 465 587 - -
Vifa2g01231 816 Gene3D - 52 315 IPR009091 -
Vifa2g01231 816 Pfam Protein kinase domain 504 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01231 816 Gene3D Transferase(Phosphotransferase) domain 1 588 807 - -
Vifa2g01231 816 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Vifa2g01231 816 SUPERFAMILY RCC1/BLIP-II 58 309 IPR009091 -
Vifa2g01231 816 SMART serkin_6 503 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01231 816 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 805 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01231 Vifa-Chr2 333746645 333749095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01231 4 807 Receptor kinase-like Gene Family AT3G55950 50.487 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa2g01231 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01231 - - gmx:100802403 1003.82