Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01229 ATGGAAGATTCAAATGAGGCACCTTCTTCTTGTTATAACCATGAAGATTCAAATGAAGATATCCAAAACAAGCATATGAACCAACAAGAACAAATCAACATTTCAAACACAAAGCCATTTATGATTTTAATGTGGGATAATGTTTGGTCTTGCATTGTTGTTCTTGTGCTATTTTGGCTCATTGAATCTATTACTCTTATTGTTGGTGTCCGTGGATCTAATTTACAATTAGGACCTTACTCGTCGCATTTGATACAAATTAACTCAATGTTAGTACAATCTATCAAGGTGGAACAAAACAATAAGCCAAAACCCGGTATGATGCTTTATGGATTTGACTTTGTTCCTCCACTAGATGTCAAAATAAATTGGACTGAGATGTATGATGTATCCATACCACCAAAATCTCAAAAGGAATGGATATTCTACCTGAATAAAGACTCTCAGTTAGATGTTCTTTATAGTGCTAAGTCCCCAGTAGCACCTTTAATCTTAGTAATTGCTAAAGGTAGAGAAAGCATAGTTGAGTGGAAAGAGGATCCATTATCCCCTGATGCAACATTATATTGGAATAATATCTATGGAAGTGGTAATGTTACACAGAAAATATCAGATTCATCTACTTATTATGTGGCTATTGCCAATATGAACCATCAAAATGTTAAGGTACAACTGAAGTTCAATGTGAATGCACTTCTCTACAATACAACCAACTCTTATAAACGATGTTCTCTAGATAACAGTTCATGTAGAATGAACACTGCTCTTTCAGCAAACATGGCACTATTAACCACTGCATGTCCTAGAGAGGGTGTAACTAATCAGGAATGGTTTGATGTGCATGTGTCTTATGAACCAAGATGGATCATATATCTTATAGGCACAGGTGTGATGGCTGTGATAATCATATGTGCATTGGAATTTTACAAAATGTTGCAAACAAATGAAGAAAATGCAAGGTTTCAATTCCAACAAGTGGAAGTGATTTCGGAAAGAGCTCCATTACTATCTCGAAAAGACAGTAATGTTACGAGTCGGAGTTCGTCTTATGATTCTTTCTCAAGTGATGAAGAGAATTCTAGTGAAGGAAAGTCAATAATAGAAGGAGAAACTAGCAATAATGATCTTAGGTGTTTGTGTGTTATATGCTTTGATGCAAGAAGGGATTGCTTTTTTCTACCTTGTGGCCATTTTGCAACATGCTATGCTTGTGGAACAAGAATTGCTGGAGAATCATGCACGTGTCCCATTTGCAGAAGAAAAATGAAGAAACTAAGAAAAATTTATATTGTGTAA 1296 0.3526 MEDSNEAPSSCYNHEDSNEDIQNKHMNQQEQINISNTKPFMILMWDNVWSCIVVLVLFWLIESITLIVGVRGSNLQLGPYSSHLIQINSMLVQSIKVEQNNKPKPGMMLYGFDFVPPLDVKINWTEMYDVSIPPKSQKEWIFYLNKDSQLDVLYSAKSPVAPLILVIAKGRESIVEWKEDPLSPDATLYWNNIYGSGNVTQKISDSSTYYVAIANMNHQNVKVQLKFNVNALLYNTTNSYKRCSLDNSSCRMNTALSANMALLTTACPREGVTNQEWFDVHVSYEPRWIIYLIGTGVMAVIIICALEFYKMLQTNEENARFQFQQVEVISERAPLLSRKDSNVTSRSSSYDSFSSDEENSSEGKSIIEGETSNNDLRCLCVICFDARRDCFFLPCGHFATCYACGTRIAGESCTCPICRRKMKKLRKIYIV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01229 431 ProSiteProfiles Zinc finger RING-type profile. 380 419 IPR001841 -
Vifa2g01229 431 MobiDBLite consensus disorder prediction 340 367 - -
Vifa2g01229 431 PANTHER OS05G0521000 PROTEIN 20 430 - -
Vifa2g01229 431 Pfam Domain of unknown function (DUF4792) 106 173 IPR032008 -
Vifa2g01229 431 SUPERFAMILY RING/U-box 379 425 - -
Vifa2g01229 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 431 IPR013083 -
Vifa2g01229 431 Pfam Zinc finger, C3HC4 type (RING finger) 378 424 - -
Vifa2g01229 431 SMART ring_2 380 418 IPR001841 -
Vifa2g01229 431 MobiDBLite consensus disorder prediction 340 356 - -
Vifa2g01229 431 Pfam Domain of unknown function (DUF4793) 199 304 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01229 Vifa-Chr2 333276388 333283409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01229 380 428 C3H Transcription Factor Family AT3G06140 38.776 5.66e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01229 - - mtr:25490879 611.298