Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01227 ATGGCAAAAACGACGTCGTTGCTTCTCTGTGCACTGTGTCTCTTTGGAACTCTAGCTCTTATCCAGGCAAAGAAGCCGAAGGAGGATCTGAAGGAGGTGACTCACAAGGTTTTCTTTGATGTTGAGATTGATGGAAAGGCTGCAGGTCGTGTTGTAATTGGACTTTTTGGGAAGGCAGTACCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAAAGTGGAAAGCCTCTACATTACAAAGGTAGCTCATTCCATAGGATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACACACGGTAATGGTATGGGCGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTAAAGCATACCGGACCAGGATTTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTAACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTACTTTCAGGAATGGATGTTGTTTACAAGGTTGAAGCTGAAGGAACTCAAAGCGGAACTCCCAAGAGCAAGGTTGTAATTGCTGATAGTGGTGAACTACCTCTGTAA 615 0.4293 MAKTTSLLLCALCLFGTLALIQAKKPKEDLKEVTHKVFFDVEIDGKAAGRVVIGLFGKAVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGTQSGTPKSKVVIADSGELPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01227 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 FunFam Peptidyl-prolyl cis-trans isomerase 30 203 - -
Vifa2g01227 204 Gene3D - 23 203 IPR029000 -
Vifa2g01227 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Vifa2g01227 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Vifa2g01227 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 36 202 - -
Vifa2g01227 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Vifa2g01227 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Vifa2g01227 204 CDD cyclophilin_ABH_like 35 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01227 Vifa-Chr2 333202657 333204978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01227 49 181 U-box Gene Family AT5G67530 47.015 4.05e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01227 K01802 - gmx:100792140 380.563