Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01222 ATGGGAAAGAGTTTGTTTCAAGAATCTCTCAAAGCTCTAGAAGCTGATATTCAGTATGCTAATACACTGGCATTAGAGCATCCAAGGGGTAAAGAAGGAGGATGCTTTCAGATGAGGCTATCATACAGTCCAGTGGCTCCACTTTTCCTCTCTCTTGTTCAATGGACTGATTACCGACTTGCTGGTGCTCTTGGTTTGCTCAGAATTCTAATTTTTGTGACATATGGAAATGGGAAAACTACAATTTCAATATATGAAAGGAAAGCAAGTATAAGACAATTTTATTCGGTTATATTTCCTGCTCTATTGCAACTTCAGAAAGGCATCACAGATTTGGAAGAAAGGAAACAGAAAGAAGTATATGCTATTAGATACCAAAAGAAGACTGGTATAAAAGATAGAAGAGAATCTGAAATTGACATTGAAAGAGAACAAGAATGTGGAGTTTGCTTGGAGGTTAAAGCTAAAGTTGTGTTGCCTAATTGTTGCCACCAAATGTGCTTTGAATGTTACACAGACTGGTGTCTTAGGTCTCAATCTTGCCCCTTTTGCCGGGATAGCCTAAAGAGAGTAAACTCTGAGGACCTTTGGATTTACACAGACACAAGTGATATAGTTGATGTTGGAACAATTTTCAAAGAGAATTGTAAGATTCTGTTTCTTTACATAGAAAAGTTACCTCTTATTATTCCAGATCCCAGACATGTTTCCTATGATCCATTTTATAGGTAA 732 0.3702 MGKSLFQESLKALEADIQYANTLALEHPRGKEGGCFQMRLSYSPVAPLFLSLVQWTDYRLAGALGLLRILIFVTYGNGKTTISIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEVYAIRYQKKTGIKDRRESEIDIEREQECGVCLEVKAKVVLPNCCHQMCFECYTDWCLRSQSCPFCRDSLKRVNSEDLWIYTDTSDIVDVGTIFKENCKILFLYIEKLPLIIPDPRHVSYDPFYR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01222 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 196 IPR013083 -
Vifa2g01222 243 SMART ring_2 147 184 IPR001841 -
Vifa2g01222 243 FunFam RING/U-box superfamily protein 125 194 - -
Vifa2g01222 243 Pfam Ring finger domain 146 185 IPR001841 -
Vifa2g01222 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
Vifa2g01222 243 SUPERFAMILY RING/U-box 137 190 - -
Vifa2g01222 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Vifa2g01222 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01222 Vifa-Chr2 331729378 331732443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01222 145 218 RAD5 or RAD16-like Gene Family AT5G43530 43.590 5.88e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01222 - - gmx:100808567 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01222 2 331729378 331732443 Vifa2g01222 2 331729378 331732443 ECH