Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01217 ATGCCTGTGCTCTCTCCCTCTATGTGGCGCTCTTTCTCTTGCCAACCACCATCTGTTCCGAATTCTTCCATTGTATCTCTTCAGCCCAGCATTAAAAATTTGTTGTTCTGGTTGTTCTTTTGGCATAAACAGAAGGCACCTAACCAATTTAATATGGAACTTTGTTATTCTGGTTGTTCTTTTGGCATAAACATAGCCAAAATTCAATGGACAAACATGAGGAGTACTTCTGCACCAGTGAACATTATTGTTGGTTCTCATGTCTGGGTTGAAGATCCAACACTAGCATGGATTGGTGGTGAAATTACTAAAATCAGTGGTGAGAACGTCCATGTTCGCACCAGAGATGGGAAAACTGTGAGTCAAGCTGTCTATACTTTAACTGCATTGGTCATTTGTGATAACTTATGA 411 0.4039 MPVLSPSMWRSFSCQPPSVPNSSIVSLQPSIKNLLFWLFFWHKQKAPNQFNMELCYSGCSFGINIAKIQWTNMRSTSAPVNIIVGSHVWVEDPTLAWIGGEITKISGENVHVRTRDGKTVSQAVYTLTALVICDNL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01217 136 Pfam Myosin N-terminal SH3-like domain 84 120 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa2g01217 136 SUPERFAMILY Myosin S1 fragment, N-terminal domain 87 120 - -
Vifa2g01217 136 Gene3D - 86 125 IPR008989 GO:0003774|GO:0005524|GO:0051015
Vifa2g01217 136 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 83 132 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01217 Vifa-Chr2 330535555 330536185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01217 77 125 Myosins gene family AT1G17580 71.429 2.21e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01217 K10357 - gmx:100777802 79.3369